9ra0
RNA-free helical (h8.6) virus-like particle composed of JGMV coat protein
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9ra0 |
| deposition_date | 2025-05-20 |
| title | RNA-free helical (h8.6) virus-like particle composed of JGMV coat protein |
| keywords | Johnsongrass mosaic virus, virus-like particle, potyvirus, coat protein, helical, VIRUS LIKE PARTICLE; VIRUS LIKE PARTICLE |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 59.97 Å |
| rg_electron | 59.78 Å |
| i0 | 3697480000.00 |
| molecular_weight | 503880.0 kDa |
| excluded_volume | 627000 ų |
| envelope_volume | 1090400 ų |
| shell_volume | 148360 ų |
| envelope_diameter | 212.3 Å |
| shell_rg | 68.84 Å |
| envelope_rg | 56.00 Å |
| shape_rg | 59.76 Å |
| total_rg | 60.05 Å |
| total_atoms | 35376 |
| n_residues | 4272 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 193.1 Å |
| rg_real | 59.43 Å |
| rg_real_error | 1.52 Å |
| i0_real | 3.6970e+09 |
| i0_real_error | 7.1370e+07 |
| rg_reciprocal | 60.42 Å |
| i0_reciprocal | 3703000000.0000 |
| total_estimate | 0.8080 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 89.1 Å |
| skewness | -0.095 |
| kurtosis | -0.332 |
| angular_range | — – 0.1300 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 772900000.0000 |
| n_real_points | 27 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.551; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.925; Smooth: 0.921 |