9ra1
RNA-free helical (h9.6) virus-like particle composed of JGMV coat protein
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9ra1 |
| deposition_date | 2025-05-20 |
| title | RNA-free helical (h9.6) virus-like particle composed of JGMV coat protein |
| keywords | Johnsongrass mosaic virus, virus-like particle, potyvirus, coat protein, helical, VIRUS LIKE PARTICLE; VIRUS LIKE PARTICLE |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 64.90 Å |
| rg_electron | 64.51 Å |
| i0 | 4651740000.00 |
| molecular_weight | 566870.0 kDa |
| excluded_volume | 705370 ų |
| envelope_volume | 1313200 ų |
| shell_volume | 165800 ų |
| envelope_diameter | 221.5 Å |
| shell_rg | 74.06 Å |
| envelope_rg | 59.87 Å |
| shape_rg | 64.49 Å |
| total_rg | 64.76 Å |
| total_atoms | 39798 |
| n_residues | 4806 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 202.2 Å |
| rg_real | 64.16 Å |
| rg_real_error | 1.53 Å |
| i0_real | 4.6520e+09 |
| i0_real_error | 9.0350e+07 |
| rg_reciprocal | 65.51 Å |
| i0_reciprocal | 4662000000.0000 |
| total_estimate | 0.7979 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 101.1 Å |
| skewness | -0.163 |
| kurtosis | -0.403 |
| angular_range | — – 0.1200 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 1317000000.0000 |
| n_real_points | 25 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.537; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.932; Smooth: 0.828 |