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9rfw

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Method: ELECTRON MICROSCOPY Dmax: 262.5 Å Quality: GOOD

SAXS Profile

SAXS profile for 9rfw

P(r) Distribution

P(r) distribution for 9rfw

1. Structure Basics

entry_id9rfw
deposition_date2025-06-05
titleManikomycin bound to the Escherichia coli 50S ribosomal subunit
keywordsDal2, PrAMP, Ribosome, Translation, Initiation, Nascent polypeptide exit tunnel, Cryo-EM, ANTIBIOTIC; ANTIBIOTIC
methodELECTRON MICROSCOPY

Download Data

2. SAXS Parameters (CRYSOL)

rg_guinier68.39
rg_electron69.18
i060258100000.00
molecular_weight1332400.0 kDa
excluded_volume1353800 ų
envelope_volume2266600 ų
shell_volume249710 ų
envelope_diameter234.0
shell_rg82.69
envelope_rg68.74
shape_rg69.23
total_rg69.17
total_atoms89292
n_residues6101
n_harmonics20
q_range— – 0.5000 −1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3

3. P(r) Analysis (GNOM)

dmax262.5
rg_real71.79
rg_real_error1.57
i0_real6.0460e+10
i0_real_error1.2780e+09
rg_reciprocal69.07
i0_reciprocal60360000000.0000
total_estimate0.8643
solution_quality GOOD a GOOD solution
n_peaks2
r_peak_primary91.3
skewness0.621
kurtosis0.681
angular_range— – 0.1150 −1
current_alpha0.8745
highest_alpha11240000000.0000
n_real_points24
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.562; Stabil: 0.881; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.927

4. Crystallography & Experiment

5. Entities & Polymer Info (38)

6. Citations (1)

7. Files & Curves (10)