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9rgt

Crystal Structure of Rattus norvegicus Enoyl-CoA Hydratase in complex with 3S-hydroxydecanoyl-CoA

Method: X-RAY DIFFRACTION D_max: 97.5 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9rgt
deposition_date	2025-06-07
last_revision	2026-05-13
title	Crystal Structure of Rattus norvegicus Enoyl-CoA Hydratase in complex with 3S-hydroxydecanoyl-CoA
keywords	crotonase, hydratase, beta-oxidation, LYASE; LYASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	33.31 Å
rg_electron	31.99 Å
i0	462442000.00
molecular_weight	171290.0 kDa
excluded_volume	213820 Å³
envelope_volume	258290 Å³
shell_volume	62082 Å³
envelope_diameter	100.9 Å
shell_rg	42.35 Å
envelope_rg	31.94 Å
shape_rg	32.00 Å
total_rg	32.71 Å
total_atoms	11972
n_residues	1536
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	97.5 Å
rg_real	32.94 Å
rg_real_error	0.45 Å
i0_real	4.6240e+08
i0_real_error	6.5060e+06
rg_reciprocal	33.10 Å
i0_reciprocal	462500000.0000
total_estimate	0.9018
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	44.7 Å
skewness	-0.008
kurtosis	-0.577
angular_range	— – 0.2400 Å⁻¹
current_alpha	0.0000
highest_alpha	152600000.0000
n_real_points	49
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.933; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.955; Smooth: 0.968

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Enoyl-CoA hydratase, mitochondrial
formula_weight	31555.4 kDa
ec_number	4.2.1.17,5.3.3.8
src_method	man
entity_count	6

Polymer

type	polypeptide(L)
strand_id	A,B,C,D,E,F
atom_count	12549

MAALRALLPRACNSLLSPVRCPEFRRFASGANFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH

Source

organism	Rattus norvegicus
common_name	Norway rat
ncbi_taxonomy_id	10116
host_organism	Escherichia coli BL21(DE3)

Entity 2 non-polymer

description	(S)-3-HYDROXYDECANOYL-COA
formula_weight	933.8 kDa
src_method	syn
entity_count	5

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	574

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6. Citations (1)

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length_a	76.791 Å
length_b	94.480 Å
length_c	248.973 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	24

space_group	P 21 21 21
int_tables_number	19
crystal_system	orthorhombic

resolution	2.000 Å
resolution_low	73.380 Å
r_factor	0.2316
r_work	0.2301
r_free	0.2578

fit	/app/data/saxs_computation/rg/9rgt/9rgt.fit
pddf	/app/data/pr_computation/rg/9rgt/9rgt.pr.out
profile	/app/data/saxs_computation/rg/9rgt/9rgt.dat

Crystal Structure of Rattus norvegicus Enoyl-CoA Hydratase in complex with 3S-hydroxydecanoyl-CoA

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction