Human Signal Peptidase in complex with artificial Signal Peptide L11

entry_id	9rjb
deposition_date	2025-06-12
title	Human Signal Peptidase in complex with artificial Signal Peptide L11
keywords	Signal Peptidase Complex, Signal Peptide, protein biogenesis, secretory pathway, membrane thinning, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

rg_guinier	33.49 Å
rg_electron	32.84 Å
i0	60967200.00
molecular_weight	67209.0 kDa
excluded_volume	86444 ų
envelope_volume	114350 ų
shell_volume	30972 ų
envelope_diameter	115.4 Å
shell_rg	37.10 Å
envelope_rg	32.58 Å
shape_rg	32.86 Å
total_rg	33.17 Å
total_atoms	4749
n_residues	589
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	117.7 Å
rg_real	33.76 Å
rg_real_error	1.35 Å
i0_real	6.0970e+07
i0_real_error	1.0690e+06
rg_reciprocal	33.59 Å
i0_reciprocal	60960000.0000
total_estimate	0.8226
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	32.6 Å
skewness	0.521
kurtosis	-0.381
angular_range	— – 0.2350 Å−1
current_alpha	0.0000
highest_alpha	6219000.0000
n_real_points	48
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.733; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.603; Smooth: 0.888

Unit Cell

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

Symmetry

space_group	P 1
int_tables_number	1
crystal_system	—

Refinement

resolution	2.600 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

EM 3D

resolution	2.60 Å
resolution_method	—
num_particles	443525

Files (7)

• pr_distribution /app/data/pr_computation/rj/9rjb/pr_distribution.json
• pr_output /app/data/pr_computation/rj/9rjb/9rjb.pr.out
• pr_plot /app/data/visualization/pr_computation/rj/9rjb/9rjb_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/rj/9rjb/9rjb.dat
• saxs_fit /app/data/saxs_computation/rj/9rjb/9rjb.fit
• saxs_log /app/data/saxs_computation/rj/9rjb/9rjb.log
• saxs_plot /app/data/visualization/saxs_computation/rj/9rjb/9rjb_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/rj/9rjb/9rjb.fit
pddf	/app/data/pr_computation/rj/9rjb/9rjb.pr.out
profile	/app/data/saxs_computation/rj/9rjb/9rjb.dat