SAXSdb — 9sc5

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1. Structure Basics

entry_id	9sc5
deposition_date	2025-08-09
last_revision	2026-02-04
title	Complex of Ovine Serum Albumin with Oxacillin
keywords	serum albumin, oxacillin, TRANSPORT PROTEIN; TRANSPORT PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	27.44 Å
rg_electron	26.76 Å
i0	145046000.00
molecular_weight	63060.0 kDa
excluded_volume	60616 Å³
envelope_volume	103960 Å³
shell_volume	32643 Å³
envelope_diameter	93.3 Å
shell_rg	33.81 Å
envelope_rg	26.86 Å
shape_rg	26.73 Å
total_rg	27.34 Å
total_atoms	4742
n_residues	583
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	88.5 Å
rg_real	27.35 Å
rg_real_error	0.58 Å
i0_real	1.4500e+08
i0_real_error	2.2230e+06
rg_reciprocal	27.38 Å
i0_reciprocal	145000000.0000
total_estimate	0.9020
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	33.6 Å
skewness	0.238
kurtosis	-0.445
angular_range	— – 0.2900 Å⁻¹
current_alpha	0.0000
highest_alpha	16230000.0000
n_real_points	59
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.913; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.983

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4. Crystallography & Experiment

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5. Entities & Polymer Info (8)

Entity 1 polymer

description	Serum albumin
formula_weight	66427.8 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	5008

DTHKSEIAHRFNDLGEENFQGLVLIAFSQYLQQCPFDEHVKLVKELTEFAKTCVADESHAGCDKSLHTLFGDELCKVATLRETYGDMADCCEKQEPERNECFLNHKDDSPDLPKLKPEPDTLCAEFKADEKKFWGKYLYEVARRHPYFYAPELLYYANKYNGVFQECCQAEDKGACLLPKIDAMREKVLASSARQRLRCASIQKFGERALKAWSVARLSQKFPKADFTDVTKIVTDLTKVHKECCHGDLLECADDRADLAKYICDHQDALSSKLKECCDKPVLEKSHCIAEVDKDAVPENLPPLTADFAEDKEVCKNYQEAKDVFLGSFLYEYSRRHPEYAVSVLLRLAKEYEATLEDCCAKEDPHACYATVFDKLKHLVDEPQNLIKKNCELFEKHGEYGFQNALIVRYTRKAPQVSTPTLVEISRSLGKVGTKCCAKPESERMPCTEDYLSLILNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSDLTLDETYVPKPFDEKFFTFHADICTLPDTEKQIKKQTALVELLKHKPKATDEQLKTVMENFVAFVDKCCAADDKEGCFVLEGPKLVASTQAALA

Entity 2 non-polymer

description	NITRIC OXIDE
formula_weight	30.0 kDa
src_method	syn
entity_count	1

Entity 3 non-polymer

description	;(2~{R},5~{R},6~{S})-3,3-dimethyl-6-[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonylamino]-7-oxidanylidene-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid ;
formula_weight	401.4 kDa
src_method	syn
entity_count	1

Entity 4 non-polymer

description	FORMIC ACID
formula_weight	46.0 kDa
src_method	syn
entity_count	6

Entity 5 non-polymer

description	MALONATE ION
formula_weight	102.0 kDa
src_method	syn
entity_count	3

Entity 6 non-polymer

description	SUCCINIC ACID
formula_weight	118.1 kDa
src_method	nat
entity_count	1

Entity 7 non-polymer

description	ACETATE ION
formula_weight	59.0 kDa
src_method	syn
entity_count	5

Entity 8 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	247

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6. Citations (1)

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length_a	121.450 Å
length_b	121.450 Å
length_c	122.229 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	6

space_group	P 32 2 1
int_tables_number	154
crystal_system	—

resolution	2.300 Å
resolution_low	48.310 Å
r_factor	0.1652
r_work	0.1640
r_free	0.2137

fit	/app/data/saxs_computation/sc/9sc5/9sc5.fit
pddf	/app/data/pr_computation/sc/9sc5/9sc5.pr.out
profile	/app/data/saxs_computation/sc/9sc5/9sc5.dat

Complex of Ovine Serum Albumin with Oxacillin

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction