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9sdj

Complex of Ovine Serum Albumin with Hydrolyzed Ampicillin

Method: X-RAY DIFFRACTION D_max: 88.0 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9sdj
deposition_date	2025-08-14
last_revision	2026-02-04
title	Complex of Ovine Serum Albumin with Hydrolyzed Ampicillin
keywords	serum albumin, hydrolyzed ampicillin, TRANSPORT PROTEIN; TRANSPORT PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	27.67 Å
rg_electron	26.69 Å
i0	76553000.00
molecular_weight	67438.0 kDa
excluded_volume	83898 Å³
envelope_volume	103230 Å³
shell_volume	32553 Å³
envelope_diameter	94.4 Å
shell_rg	33.72 Å
envelope_rg	26.70 Å
shape_rg	26.69 Å
total_rg	27.39 Å
total_atoms	4721
n_residues	581
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	88.0 Å
rg_real	27.57 Å
rg_real_error	0.53 Å
i0_real	7.6550e+07
i0_real_error	1.0590e+06
rg_reciprocal	27.61 Å
i0_reciprocal	76550000.0000
total_estimate	0.9050
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	34.0 Å
skewness	0.220
kurtosis	-0.457
angular_range	— – 0.2850 Å⁻¹
current_alpha	0.0000
highest_alpha	11390000.0000
n_real_points	58
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.929; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.973

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4. Crystallography & Experiment

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5. Entities & Polymer Info (7)

Entity 1 polymer

description	Serum albumin
formula_weight	66427.8 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	4804

DTHKSEIAHRFNDLGEENFQGLVLIAFSQYLQQCPFDEHVKLVKELTEFAKTCVADESHAGCDKSLHTLFGDELCKVATLRETYGDMADCCEKQEPERNECFLNHKDDSPDLPKLKPEPDTLCAEFKADEKKFWGKYLYEVARRHPYFYAPELLYYANKYNGVFQECCQAEDKGACLLPKIDAMREKVLASSARQRLRCASIQKFGERALKAWSVARLSQKFPKADFTDVTKIVTDLTKVHKECCHGDLLECADDRADLAKYICDHQDALSSKLKECCDKPVLEKSHCIAEVDKDAVPENLPPLTADFAEDKEVCKNYQEAKDVFLGSFLYEYSRRHPEYAVSVLLRLAKEYEATLEDCCAKEDPHACYATVFDKLKHLVDEPQNLIKKNCELFEKHGEYGFQNALIVRYTRKAPQVSTPTLVEISRSLGKVGTKCCAKPESERMPCTEDYLSLILNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSDLTLDETYVPKPFDEKFFTFHADICTLPDTEKQIKKQTALVELLKHKPKATDEQLKTVMENFVAFVDKCCAADDKEGCFVLEGPKLVASTQAALA

Entity 2 non-polymer

description	(2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid
formula_weight	367.4 kDa
src_method	syn
entity_count	1

Entity 3 non-polymer

description	FORMIC ACID
formula_weight	46.0 kDa
src_method	syn
entity_count	3

Entity 4 non-polymer

description	L(+)-TARTARIC ACID
formula_weight	150.1 kDa
src_method	syn
entity_count	1

Entity 5 non-polymer

description	ACETATE ION
formula_weight	59.0 kDa
src_method	syn
entity_count	3

Entity 6 non-polymer

description	MALONATE ION
formula_weight	102.0 kDa
src_method	syn
entity_count	5

Entity 7 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	67

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6. Citations (1)

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length_a	121.189 Å
length_b	121.189 Å
length_c	121.965 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	6

space_group	P 32 2 1
int_tables_number	154
crystal_system	—

resolution	2.550 Å
resolution_low	48.200 Å
r_factor	0.1659
r_work	0.1640
r_free	0.2126

fit	/app/data/saxs_computation/sd/9sdj/9sdj.fit
pddf	/app/data/pr_computation/sd/9sdj/9sdj.pr.out
profile	/app/data/saxs_computation/sd/9sdj/9sdj.dat