9sdq

Cryo-EM structure of the Arabidopsis thaliana 40S ribosomal subunit (Head)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Small ribosomal subunit protein uS3z

OrganismNot specified

UniProt Q9SIP7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (500-MER) × 1 Small ribosomal subunit protein uS7z × 1 (Q9ZUT9) Small ribosomal subunit protein uS19x × 1 (Q9FY64) Small ribosomal subunit protein uS9z × 1 (Q9SK22) Small ribosomal subunit protein uS13z/uS13y/uS13x × 1 (P34788) Small ribosomal subunit protein eS19x × 1 (Q9FNP8) Small ribosomal subunit protein uS10z/uS10x × 1 (P49200) Small ribosomal subunit protein eS28x × 1 (P34789) Small ribosomal subunit protein uS14z/uS14y/uS14x × 1 (Q680P8) Small ribosomal subunit protein eS25y × 1 (Q9SIK2) Small ribosomal subunit protein eS10x × 1 (Q9LTF2) Small ribosomal subunit protein eS17w × 1 (Q9LZ17) POTASSIUM ION × 3 MAGNESIUM ION × 1 ZINC ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS3A_ARATH
Isoform —
PDB entities 2
Chains and sequence ranges Author chain BD; PDBConstruct 1–250; UniProt 1–250

Small ribosomal subunit protein uS7z

OrganismNot specified

UniProt Q9ZUT9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (500-MER) × 1 Small ribosomal subunit protein uS3z × 1 (Q9SIP7) Small ribosomal subunit protein uS19x × 1 (Q9FY64) Small ribosomal subunit protein uS9z × 1 (Q9SK22) Small ribosomal subunit protein uS13z/uS13y/uS13x × 1 (P34788) Small ribosomal subunit protein eS19x × 1 (Q9FNP8) Small ribosomal subunit protein uS10z/uS10x × 1 (P49200) Small ribosomal subunit protein eS28x × 1 (P34789) Small ribosomal subunit protein uS14z/uS14y/uS14x × 1 (Q680P8) Small ribosomal subunit protein eS25y × 1 (Q9SIK2) Small ribosomal subunit protein eS10x × 1 (Q9LTF2) Small ribosomal subunit protein eS17w × 1 (Q9LZ17) POTASSIUM ION × 3 MAGNESIUM ION × 1 ZINC ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS51_ARATH
Isoform —
PDB entities 3
Chains and sequence ranges Author chain BF; PDBConstruct 1–207; UniProt 1–207

Small ribosomal subunit protein uS19x

OrganismNot specified

UniProt Q9FY64

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (500-MER) × 1 Small ribosomal subunit protein uS3z × 1 (Q9SIP7) Small ribosomal subunit protein uS7z × 1 (Q9ZUT9) Small ribosomal subunit protein uS9z × 1 (Q9SK22) Small ribosomal subunit protein uS13z/uS13y/uS13x × 1 (P34788) Small ribosomal subunit protein eS19x × 1 (Q9FNP8) Small ribosomal subunit protein uS10z/uS10x × 1 (P49200) Small ribosomal subunit protein eS28x × 1 (P34789) Small ribosomal subunit protein uS14z/uS14y/uS14x × 1 (Q680P8) Small ribosomal subunit protein eS25y × 1 (Q9SIK2) Small ribosomal subunit protein eS10x × 1 (Q9LTF2) Small ribosomal subunit protein eS17w × 1 (Q9LZ17) POTASSIUM ION × 3 MAGNESIUM ION × 1 ZINC ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS154_ARATH
Isoform —
PDB entities 4
Chains and sequence ranges Author chain BP; PDBConstruct 1–152; UniProt 1–152

Small ribosomal subunit protein uS9z

OrganismNot specified

UniProt Q9SK22

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (500-MER) × 1 Small ribosomal subunit protein uS3z × 1 (Q9SIP7) Small ribosomal subunit protein uS7z × 1 (Q9ZUT9) Small ribosomal subunit protein uS19x × 1 (Q9FY64) Small ribosomal subunit protein uS13z/uS13y/uS13x × 1 (P34788) Small ribosomal subunit protein eS19x × 1 (Q9FNP8) Small ribosomal subunit protein uS10z/uS10x × 1 (P49200) Small ribosomal subunit protein eS28x × 1 (P34789) Small ribosomal subunit protein uS14z/uS14y/uS14x × 1 (Q680P8) Small ribosomal subunit protein eS25y × 1 (Q9SIK2) Small ribosomal subunit protein eS10x × 1 (Q9LTF2) Small ribosomal subunit protein eS17w × 1 (Q9LZ17) POTASSIUM ION × 3 MAGNESIUM ION × 1 ZINC ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS161_ARATH
Isoform —
PDB entities 5
Chains and sequence ranges Author chain BQ; PDBConstruct 1–146; UniProt 1–146

Small ribosomal subunit protein uS13z/uS13y/uS13x

OrganismNot specified

UniProt P34788

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (500-MER) × 1 Small ribosomal subunit protein uS3z × 1 (Q9SIP7) Small ribosomal subunit protein uS7z × 1 (Q9ZUT9) Small ribosomal subunit protein uS19x × 1 (Q9FY64) Small ribosomal subunit protein uS9z × 1 (Q9SK22) Small ribosomal subunit protein eS19x × 1 (Q9FNP8) Small ribosomal subunit protein uS10z/uS10x × 1 (P49200) Small ribosomal subunit protein eS28x × 1 (P34789) Small ribosomal subunit protein uS14z/uS14y/uS14x × 1 (Q680P8) Small ribosomal subunit protein eS25y × 1 (Q9SIK2) Small ribosomal subunit protein eS10x × 1 (Q9LTF2) Small ribosomal subunit protein eS17w × 1 (Q9LZ17) POTASSIUM ION × 3 MAGNESIUM ION × 1 ZINC ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS18_ARATH
Isoform —
PDB entities 6
Chains and sequence ranges Author chain BS; PDBConstruct 1–152; UniProt 1–152

Small ribosomal subunit protein eS19x

OrganismNot specified

UniProt Q9FNP8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (500-MER) × 1 Small ribosomal subunit protein uS3z × 1 (Q9SIP7) Small ribosomal subunit protein uS7z × 1 (Q9ZUT9) Small ribosomal subunit protein uS19x × 1 (Q9FY64) Small ribosomal subunit protein uS9z × 1 (Q9SK22) Small ribosomal subunit protein uS13z/uS13y/uS13x × 1 (P34788) Small ribosomal subunit protein uS10z/uS10x × 1 (P49200) Small ribosomal subunit protein eS28x × 1 (P34789) Small ribosomal subunit protein uS14z/uS14y/uS14x × 1 (Q680P8) Small ribosomal subunit protein eS25y × 1 (Q9SIK2) Small ribosomal subunit protein eS10x × 1 (Q9LTF2) Small ribosomal subunit protein eS17w × 1 (Q9LZ17) POTASSIUM ION × 3 MAGNESIUM ION × 1 ZINC ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS193_ARATH
Isoform —
PDB entities 7
Chains and sequence ranges Author chain BT; PDBConstruct 1–142; UniProt 1–142

Small ribosomal subunit protein uS10z/uS10x

OrganismNot specified

UniProt P49200

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (500-MER) × 1 Small ribosomal subunit protein uS3z × 1 (Q9SIP7) Small ribosomal subunit protein uS7z × 1 (Q9ZUT9) Small ribosomal subunit protein uS19x × 1 (Q9FY64) Small ribosomal subunit protein uS9z × 1 (Q9SK22) Small ribosomal subunit protein uS13z/uS13y/uS13x × 1 (P34788) Small ribosomal subunit protein eS19x × 1 (Q9FNP8) Small ribosomal subunit protein eS28x × 1 (P34789) Small ribosomal subunit protein uS14z/uS14y/uS14x × 1 (Q680P8) Small ribosomal subunit protein eS25y × 1 (Q9SIK2) Small ribosomal subunit protein eS10x × 1 (Q9LTF2) Small ribosomal subunit protein eS17w × 1 (Q9LZ17) POTASSIUM ION × 3 MAGNESIUM ION × 1 ZINC ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS201_ARATH
Isoform —
PDB entities 8
Chains and sequence ranges Author chain BU; PDBConstruct 1–124; UniProt 1–124

Small ribosomal subunit protein eS28x

OrganismNot specified

UniProt P34789

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (500-MER) × 1 Small ribosomal subunit protein uS3z × 1 (Q9SIP7) Small ribosomal subunit protein uS7z × 1 (Q9ZUT9) Small ribosomal subunit protein uS19x × 1 (Q9FY64) Small ribosomal subunit protein uS9z × 1 (Q9SK22) Small ribosomal subunit protein uS13z/uS13y/uS13x × 1 (P34788) Small ribosomal subunit protein eS19x × 1 (Q9FNP8) Small ribosomal subunit protein uS10z/uS10x × 1 (P49200) Small ribosomal subunit protein uS14z/uS14y/uS14x × 1 (Q680P8) Small ribosomal subunit protein eS25y × 1 (Q9SIK2) Small ribosomal subunit protein eS10x × 1 (Q9LTF2) Small ribosomal subunit protein eS17w × 1 (Q9LZ17) POTASSIUM ION × 3 MAGNESIUM ION × 1 ZINC ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS282_ARATH
Isoform —
PDB entities 9
Chains and sequence ranges Author chain Bc; PDBConstruct 1–64; UniProt 1–64

Small ribosomal subunit protein uS14z/uS14y/uS14x

OrganismNot specified

UniProt Q680P8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (500-MER) × 1 Small ribosomal subunit protein uS3z × 1 (Q9SIP7) Small ribosomal subunit protein uS7z × 1 (Q9ZUT9) Small ribosomal subunit protein uS19x × 1 (Q9FY64) Small ribosomal subunit protein uS9z × 1 (Q9SK22) Small ribosomal subunit protein uS13z/uS13y/uS13x × 1 (P34788) Small ribosomal subunit protein eS19x × 1 (Q9FNP8) Small ribosomal subunit protein uS10z/uS10x × 1 (P49200) Small ribosomal subunit protein eS28x × 1 (P34789) Small ribosomal subunit protein eS25y × 1 (Q9SIK2) Small ribosomal subunit protein eS10x × 1 (Q9LTF2) Small ribosomal subunit protein eS17w × 1 (Q9LZ17) POTASSIUM ION × 3 MAGNESIUM ION × 1 ZINC ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS29_ARATH
Isoform —
PDB entities 10
Chains and sequence ranges Author chain d; PDBConstruct 1–56; UniProt 1–56

Small ribosomal subunit protein eS25y

OrganismNot specified

UniProt Q9SIK2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (500-MER) × 1 Small ribosomal subunit protein uS3z × 1 (Q9SIP7) Small ribosomal subunit protein uS7z × 1 (Q9ZUT9) Small ribosomal subunit protein uS19x × 1 (Q9FY64) Small ribosomal subunit protein uS9z × 1 (Q9SK22) Small ribosomal subunit protein uS13z/uS13y/uS13x × 1 (P34788) Small ribosomal subunit protein eS19x × 1 (Q9FNP8) Small ribosomal subunit protein uS10z/uS10x × 1 (P49200) Small ribosomal subunit protein eS28x × 1 (P34789) Small ribosomal subunit protein uS14z/uS14y/uS14x × 1 (Q680P8) Small ribosomal subunit protein eS10x × 1 (Q9LTF2) Small ribosomal subunit protein eS17w × 1 (Q9LZ17) POTASSIUM ION × 3 MAGNESIUM ION × 1 ZINC ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS252_ARATH
Isoform —
PDB entities 11
Chains and sequence ranges Author chain e; PDBConstruct 1–108; UniProt 1–108

Small ribosomal subunit protein eS10x

OrganismNot specified

UniProt Q9LTF2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (500-MER) × 1 Small ribosomal subunit protein uS3z × 1 (Q9SIP7) Small ribosomal subunit protein uS7z × 1 (Q9ZUT9) Small ribosomal subunit protein uS19x × 1 (Q9FY64) Small ribosomal subunit protein uS9z × 1 (Q9SK22) Small ribosomal subunit protein uS13z/uS13y/uS13x × 1 (P34788) Small ribosomal subunit protein eS19x × 1 (Q9FNP8) Small ribosomal subunit protein uS10z/uS10x × 1 (P49200) Small ribosomal subunit protein eS28x × 1 (P34789) Small ribosomal subunit protein uS14z/uS14y/uS14x × 1 (Q680P8) Small ribosomal subunit protein eS25y × 1 (Q9SIK2) Small ribosomal subunit protein eS17w × 1 (Q9LZ17) POTASSIUM ION × 3 MAGNESIUM ION × 1 ZINC ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS103_ARATH
Isoform —
PDB entities 12
Chains and sequence ranges Author chain BK; PDBConstruct 1–179; UniProt 1–179

Small ribosomal subunit protein eS17w

OrganismNot specified

UniProt Q9LZ17

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (500-MER) × 1 Small ribosomal subunit protein uS3z × 1 (Q9SIP7) Small ribosomal subunit protein uS7z × 1 (Q9ZUT9) Small ribosomal subunit protein uS19x × 1 (Q9FY64) Small ribosomal subunit protein uS9z × 1 (Q9SK22) Small ribosomal subunit protein uS13z/uS13y/uS13x × 1 (P34788) Small ribosomal subunit protein eS19x × 1 (Q9FNP8) Small ribosomal subunit protein uS10z/uS10x × 1 (P49200) Small ribosomal subunit protein eS28x × 1 (P34789) Small ribosomal subunit protein uS14z/uS14y/uS14x × 1 (Q680P8) Small ribosomal subunit protein eS25y × 1 (Q9SIK2) Small ribosomal subunit protein eS10x × 1 (Q9LTF2) POTASSIUM ION × 3 MAGNESIUM ION × 1 ZINC ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS174_ARATH
Isoform —
PDB entities 13
Chains and sequence ranges Author chain BR; PDBConstruct 1–141; UniProt 1–141

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9sdq
Deposition date deposition_date2025-08-14
Structure title titleCryo-EM structure of the Arabidopsis thaliana 40S ribosomal subunit (Head)
Keywords keywordsRibosomal 40S subunit -Head region, RIBOSOME; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9sdq__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9sdq__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9sdq__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)42.80 Å
Rg (electron density)43.05 Å
Total Rg43.26 Å
Atom count38198
Residues1850
Excluded volume345850 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9sdq__assembly_1__model_1 13-meric (13) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (16)

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7. Citations (1)