CTLH-CRA domains of the Maea-RanBP10 mutant (Q519G, F543L, Y548F and V556F) complex

entry_id	9soh
deposition_date	2025-09-12
last_revision	2026-02-18
title	CTLH-CRA domains of the Maea-RanBP10 mutant (Q519G, F543L, Y548F and V556F) complex
keywords	RanBPM, CTLH complex, Gid complex, E3 ligase, LIGASE; LIGASE
method	X-RAY DIFFRACTION

rg_guinier	39.43 Å
rg_electron	39.16 Å
i0	228345000.00
molecular_weight	119340.0 kDa
excluded_volume	148440 ų
envelope_volume	212660 ų
shell_volume	47197 ų
envelope_diameter	151.2 Å
shell_rg	42.76 Å
envelope_rg	39.30 Å
shape_rg	39.17 Å
total_rg	39.37 Å
total_atoms	8379
n_residues	1031
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	138.6 Å
rg_real	39.55 Å
rg_real_error	1.22 Å
i0_real	2.2830e+08
i0_real_error	4.3380e+06
rg_reciprocal	39.48 Å
i0_reciprocal	228300000.0000
total_estimate	0.8675
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	48.5 Å
skewness	0.389
kurtosis	-0.170
angular_range	— – 0.2000 Å−1
current_alpha	0.0000
highest_alpha	23360000.0000
n_real_points	41
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.812; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.940; Smooth: 0.896

Unit Cell

length_a	359.825 Å
length_b	359.825 Å
length_c	359.825 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	384

Symmetry

space_group	F 41 3 2
int_tables_number	210
crystal_system	cubic

Refinement

resolution	3.545 Å
resolution_low	46.850 Å
r_factor	0.2831
r_work	0.2824
r_free	0.2954

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/so/9soh/pr_distribution.json
• pr_output /app/data/pr_computation/so/9soh/9soh.pr.out
• pr_plot /app/data/visualization/pr_computation/so/9soh/9soh_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/so/9soh/9soh.dat
• saxs_fit /app/data/saxs_computation/so/9soh/9soh.fit
• saxs_log /app/data/saxs_computation/so/9soh/9soh.log
• saxs_plot /app/data/visualization/saxs_computation/so/9soh/9soh_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/so/9soh/9soh.fit
pddf	/app/data/pr_computation/so/9soh/9soh.pr.out
profile	/app/data/saxs_computation/so/9soh/9soh.dat