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9t5l

Helical reconstruction of Langya henipavirus N-core nucleocapsid-like complex

Method: ELECTRON MICROSCOPY D_max: 91.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9t5l
deposition_date	2025-11-05
title	Helical reconstruction of Langya henipavirus N-core nucleocapsid-like complex
keywords	Henipavirus, Langya virus, cryo-EM, nucleocapsid, nucleoprotein, RNA, VIRAL PROTEIN; VIRAL PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	26.77 Å
rg_electron	26.09 Å
i0	38082300.00
molecular_weight	46883.0 kDa
excluded_volume	58477 Å³
envelope_volume	76936 Å³
shell_volume	25615 Å³
envelope_diameter	95.5 Å
shell_rg	32.10 Å
envelope_rg	26.54 Å
shape_rg	26.10 Å
total_rg	26.79 Å
total_atoms	3291
n_residues	404
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	91.8 Å
rg_real	26.90 Å
rg_real_error	0.74 Å
i0_real	3.8080e+07
i0_real_error	5.7270e+05
rg_reciprocal	26.86 Å
i0_reciprocal	38080000.0000
total_estimate	0.8636
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	28.0 Å
skewness	0.462
kurtosis	-0.280
angular_range	— – 0.2950 Å⁻¹
current_alpha	0.0000
highest_alpha	5849000.0000
n_real_points	60
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.808; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.854; Smooth: 0.946

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	Nucleocapsid
formula_weight	51199.5 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3291

MHHHHHHGKPIPNPLLGLDSTENLYFQGIDPFTMFSTLKNETEKFREYQANLGRQGKPLASTATLTTKIIVYNPSNKSPALRWEITKFAMRLIWSPAASHSVKVGAALTLLSAHAENPGAMIRSLVNDPDIEVVITDISEFDHGVPRLERRGEKAEQQMDSYRRILDRAPQENLFYNPEVDDLEILDSGTFLFAIATVLAQVWILVAKAVTAPDTAEESENKRWAKYVQQKRVNPDYLVSNRWITAMRSLISIDLSVRKYMVEILIEVKKSGVARGRLNEMIADIGNYIEETGMAGFFLTIKYGLEMKFPVIVINEFQADLLTLQTLMRTYMDLGPRAPYMVLLEDSIQTKFAPGNYPLLWSFAMGVGTTLDRSMGALNINRSYLEPIYFKLGQNAARKNAGSIDRKLAEELGLTQEQANEIKEMMQEVTTQRHETNVQAREGKFNVAAGGIE

Source

organism	Langya virus
ncbi_taxonomy_id	2971765
host_organism	Escherichia coli

Entity 2 polymer

description	;RNA (5'-R(APAPAPAPAPA)-3') ;
formula_weight	1930.3 kDa
src_method	syn
entity_count	1

Polymer

type	polyribonucleotide
strand_id	B

AAAAAA

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.100 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.10 Å
resolution_method	—
num_particles	170777

fit	/app/data/saxs_computation/t5/9t5l/9t5l.fit
pddf	/app/data/pr_computation/t5/9t5l/9t5l.pr.out
profile	/app/data/saxs_computation/t5/9t5l/9t5l.dat

Helical reconstruction of Langya henipavirus N-core nucleocapsid-like complex

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)