Crystal Structure of the Listeria monocytogenes CadC in complex with DNA

entry_id	9t6t
deposition_date	2025-11-07
last_revision	2026-05-06
title	Crystal Structure of the Listeria monocytogenes CadC in complex with DNA
keywords	CadC-DNA complex, DNA BINDING PROTEIN; DNA BINDING PROTEIN
method	X-RAY DIFFRACTION

rg_guinier	22.83 Å
rg_electron	21.83 Å
i0	29544400.00
molecular_weight	35286.0 kDa
excluded_volume	41449 ų
envelope_volume	52438 ų
shell_volume	20689 ų
envelope_diameter	74.4 Å
shell_rg	27.89 Å
envelope_rg	21.86 Å
shape_rg	21.71 Å
total_rg	22.81 Å
total_atoms	2416
n_residues	244
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	73.7 Å
rg_real	22.81 Å
rg_real_error	0.42 Å
i0_real	2.9540e+07
i0_real_error	3.9910e+05
rg_reciprocal	22.82 Å
i0_reciprocal	29540000.0000
total_estimate	0.9049
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	27.9 Å
skewness	0.274
kurtosis	-0.498
angular_range	— – 0.3500 Å−1
current_alpha	0.0000
highest_alpha	3905000.0000
n_real_points	67
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.929; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.987; Smooth: 0.986

Unit Cell

length_a	50.503 Å
length_b	82.073 Å
length_c	38.476 Å
angle_alpha	90.00 °
angle_beta	98.31 °
angle_gamma	90.00 °
z_pdb	4

Symmetry

space_group	P 1 21 1
int_tables_number	4
crystal_system	monoclinic

Refinement

resolution	1.690 Å
resolution_low	42.680 Å
r_factor	0.2496
r_work	0.2478
r_free	0.2854

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/t6/9t6t/pr_distribution.json
• pr_output /app/data/pr_computation/t6/9t6t/9t6t.pr.out
• pr_plot /app/data/visualization/pr_computation/t6/9t6t/9t6t_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/t6/9t6t/9t6t.dat
• saxs_fit /app/data/saxs_computation/t6/9t6t/9t6t.fit
• saxs_log /app/data/saxs_computation/t6/9t6t/9t6t.log
• saxs_plot /app/data/visualization/saxs_computation/t6/9t6t/9t6t_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/t6/9t6t/9t6t.fit
pddf	/app/data/pr_computation/t6/9t6t/9t6t.pr.out
profile	/app/data/saxs_computation/t6/9t6t/9t6t.dat