9u8p
;Crystal structure of cupin-domain containing protein (AzcA) forming triazine (6-amino-4-oxo-4,5-dihydro-1,3,5-triazine-2-carboxylic acid) moiety from Streptomyces mobaraensis in complex with manganese and 6-amino-4-oxo-4,5-dihydro-1,3,5-triazine-2-carboxylic acid. ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9u8p |
| deposition_date | 2025-03-26 |
| last_revision | 2026-04-01 |
| title | ;Crystal structure of cupin-domain containing protein (AzcA) forming triazine (6-amino-4-oxo-4,5-dihydro-1,3,5-triazine-2-carboxylic acid) moiety from Streptomyces mobaraensis in complex with manganese and 6-amino-4-oxo-4,5-dihydro-1,3,5-triazine-2-carboxylic acid. ; |
| keywords | ;cupin-domain containing protein, AzcA, 5-azacytidine biosynthesis, 6-amino-4-oxo-4, 5-dihydro-1, 3, 5-triazine-2-carboxylic acid, OXIDOREDUCTASE ;; OXIDOREDUCTASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 21.75 Å |
| rg_electron | 20.94 Å |
| i0 | 60539700.00 |
| molecular_weight | 39898.0 kDa |
| excluded_volume | 38022 ų |
| envelope_volume | 62131 ų |
| shell_volume | 24285 ų |
| envelope_diameter | 66.6 Å |
| shell_rg | 27.88 Å |
| envelope_rg | 20.79 Å |
| shape_rg | 20.93 Å |
| total_rg | 21.54 Å |
| total_atoms | 3012 |
| n_residues | 377 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 65.8 Å |
| rg_real | 21.60 Å |
| rg_real_error | 0.24 Å |
| i0_real | 6.0540e+07 |
| i0_real_error | 6.3680e+05 |
| rg_reciprocal | 21.63 Å |
| i0_reciprocal | 60540000.0000 |
| total_estimate | 0.9109 |
| solution_quality | EXCELLENT a EXCELLENT solution |
| n_peaks | 2 |
| r_peak_primary | 27.5 Å |
| skewness | 0.105 |
| kurtosis | -0.551 |
| angular_range | — – 0.3650 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 9557000.0000 |
| n_real_points | 68 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.950; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.993; Smooth: 0.995 |