SAXSdb — 9uax

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1. Structure Basics

entry_id	9uax
deposition_date	2025-04-01
title	The structure of Myanmar_N2 and AS4C_Fab complex
keywords	protein, VIRAL PROTEIN/IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM complex; VIRAL PROTEIN/IMMUNE SYSTEM
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	59.71 Å
rg_electron	60.33 Å
i0	2037680000.00
molecular_weight	365040.0 kDa
excluded_volume	451130 Å³
envelope_volume	694330 Å³
shell_volume	98813 Å³
envelope_diameter	217.8 Å
shell_rg	58.16 Å
envelope_rg	60.79 Å
shape_rg	60.32 Å
total_rg	60.30 Å
total_atoms	25616
n_residues	3304
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	202.4 Å
rg_real	59.91 Å
rg_real_error	2.89 Å
i0_real	2.0380e+09
i0_real_error	4.9990e+07
rg_reciprocal	59.52 Å
i0_reciprocal	2036000000.0000
total_estimate	0.8593
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	62.3 Å
skewness	0.345
kurtosis	-0.420
angular_range	— – 0.1300 Å⁻¹
current_alpha	0.0000
highest_alpha	115000000.0000
n_real_points	27
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.880; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.528

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4. Crystallography & Experiment

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5. Entities & Polymer Info (6)

Entity 1 polymer

description	AS4C antibody lignt chain
formula_weight	24697.6 kDa
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,C,E,G
atom_count	25616

EVQLVESGGGLVQPGGSLRLSCAASGVTFSDHAMNWVRQAPGKGLEWVAGIIGSGGNTKYADSVKGRFTISRDNSENTVHLQMNSLRAEDTAMYYCAKTAHTSGHFYNGMDVWGLGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKHHHHHH

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

Entity 2 polymer

description	AS4C antibody heavy chain
formula_weight	23470.0 kDa
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	B,D,F,H

DIQMTQSPSSLSASVGDRVTITCQASQDIANYLSWYQQKPGKAPKLLIYDAANLERGVPSRFSGSGSGTDFTFTISSLLPEDFATYYCQQYDSVPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

Entity 3 polymer

description	Vasodilator-stimulated phosphoprotein,Neuraminidase
formula_weight	54393.0 kDa
ec_number	3.2.1.18
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	I,J,K,L

MLLVNQSHQGFNKEHTSKMVSAIVLYVLLAAAAHSAFAADPHHHHHHSSSDYSDLQRVKQELLEEVKKELQKVKEEIIEAFVQELRKRGSLVPRGSPSRSEFEYRNWSKPQCDITGFAPFSKDNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGKGTTLNNVHSNNTVRDRTPYRTLLMNELGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCITGDDKNATASFIYNGRLVDSVVSWSKEILRTQESECVCINGTCTVVMTDGSASGKADTKILFIEEGKIVHTSTLSGSAQHVEECSCYPRYPGVRCVCRDNWKGSNRPIVDINIKDHSIVSSYVCSGLVGDTPRKNDSSSSSHCLDPNNEEGGHGVKGWAFDDGNDVWMGRTISEKSRLGYETFKVIEGWSNPKSKLQINRQVIVDRGNRSGYSGIFSVEGKSCINRCFYVELIRGRKEETEVLWTSNSIVVFCGTSGTYGTGSWPDGADINLMPI

Source

organism	Influenza A virus (A/California/VRDL364/2009(mixed))
ncbi_taxonomy_id	1049605
host_organism	Homo sapiens

Entity 4 branched

description	;alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ;
formula_weight	1397.2 kDa
src_method	man
entity_count	4

Entity 5 non-polymer

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	syn
entity_count	4

Entity 6 non-polymer

description	CALCIUM ION
formula_weight	40.1 kDa
src_method	syn
entity_count	4

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.710 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	2.71 Å
resolution_method	—
num_particles	217243

fit	/app/data/saxs_computation/ua/9uax/9uax.fit
pddf	/app/data/pr_computation/ua/9uax/9uax.pr.out
profile	/app/data/saxs_computation/ua/9uax/9uax.dat

The structure of Myanmar_N2 and AS4C_Fab complex

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (6)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 branched

Entity 5 non-polymer

Entity 6 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)