← Back to search

9udc

Cryo-EM Structure of SLC15A2 with NAD+ (Pose 1)

Method: ELECTRON MICROSCOPY D_max: 112.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9udc
deposition_date	2025-04-06
title	Cryo-EM Structure of SLC15A2 with NAD+ (Pose 1)
keywords	slc15a2, NAD+, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	32.58 Å
rg_electron	32.15 Å
i0	77427000.00
molecular_weight	74433.0 kDa
excluded_volume	95035 Å³
envelope_volume	120670 Å³
shell_volume	33554 Å³
envelope_diameter	118.0 Å
shell_rg	36.64 Å
envelope_rg	32.67 Å
shape_rg	32.16 Å
total_rg	32.50 Å
total_atoms	5250
n_residues	657
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	112.3 Å
rg_real	32.98 Å
rg_real_error	1.43 Å
i0_real	7.7430e+07
i0_real_error	1.4740e+06
rg_reciprocal	32.81 Å
i0_reciprocal	77420000.0000
total_estimate	0.8262
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	29.8 Å
skewness	0.577
kurtosis	-0.277
angular_range	— – 0.2450 Å⁻¹
current_alpha	0.0000
highest_alpha	10950000.0000
n_real_points	50
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.724; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.763; Smooth: 0.806

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

Entity 1 polymer

description	Solute carrier family 15 member 2
formula_weight	81861.1 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	5250

MNPFQKNESKETLFSPVSIEEVPPRPPSPPKKPSPTICGSNYPLSIAFIVVNEFCERFSYYGMKAVLILYFLYFLHWNEDTSTSIYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVIKSLGALPILGGQVVHTVLSLIGLSLIALGTGGIKPCVAAFGGDQFEEKHAEERTRYFSVFYLSINAGSLISTFITPMLRGDVQCFGEDCYALAFGVPGLLMVIALVVFAMGSKIYNKPPPEGNIVAQVFKCIWFAISNRFKNRSGDIPKRQHWLDWAAEKYPKQLIMDVKALTRVLFLYIPLPMFWALLDQQGSRWTLQAIRMNRNLGFFVLQPDQMQVLNPLLVLIFIPLFDFVIYRLVSKCGINFSSLRKMAVGMILACLAFAVAAAVEIKINEMAPAQPGPQEVFLQVLNLADDEVKVTVVGNENNSLLIESIKSFQKTPHYSKLHLKTKSQDFHFHLKYHNLSLYTEHSVQEKNWYSLVIREDGNSISSMMVKDTESRTTNGMTTVRFVNTLHKDVNISLSTDTSLNVGEDYGVSAYRTVQRGEYPAVHCRTEDKNFSLNLGLLDFGAAYLFVITNNTNQGLQAWKIEDIPANKMSIAWQLPQYALVTAGEVMFSVTGLEFSYSQAPSSMKSVLQAAWLLTIAVGNIIVLVVAQFSGLVQWAEFILFSCLLLVICLIFSIMGYYYVPVKTEDMRGPADKHIPHIQGNMIKLETKKTKL

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

Entity 2 non-polymer

description	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
formula_weight	663.4 kDa
src_method	syn
entity_count	1

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.380 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.38 Å
resolution_method	—
num_particles	727544

fit	/app/data/saxs_computation/ud/9udc/9udc.fit
pddf	/app/data/pr_computation/ud/9udc/9udc.pr.out
profile	/app/data/saxs_computation/ud/9udc/9udc.dat

Cryo-EM Structure of SLC15A2 with NAD+ (Pose 1)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)