SAXSdb — 9ui6

▼

1. Structure Basics

entry_id	9ui6
deposition_date	2025-04-15
title	transporter
keywords	inward, TRANSPORT PROTEIN; TRANSPORT PROTEIN
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	27.74 Å
rg_electron	26.43 Å
i0	50362900.00
molecular_weight	63578.0 kDa
excluded_volume	83289 Å³
envelope_volume	104830 Å³
shell_volume	33023 Å³
envelope_diameter	95.0 Å
shell_rg	33.82 Å
envelope_rg	26.58 Å
shape_rg	26.41 Å
total_rg	27.43 Å
total_atoms	4492
n_residues	547
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	88.7 Å
rg_real	27.71 Å
rg_real_error	0.73 Å
i0_real	5.0360e+07
i0_real_error	7.9940e+05
rg_reciprocal	27.72 Å
i0_reciprocal	50360000.0000
total_estimate	0.8980
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	31.1 Å
skewness	0.294
kurtosis	-0.395
angular_range	— – 0.2850 Å⁻¹
current_alpha	0.0000
highest_alpha	5693000.0000
n_real_points	58
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.932; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.875

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (3)

Entity 1 polymer

description	Protein NRT1/ PTR FAMILY 2.10
formula_weight	71105.2 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	4492

MKSRVILNHRDRRDKNHNNNNTNHYTQVDTMERKPLEVEPSTTTTNTDVVDSFEEEQRKIVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTSVFNLKSYTAATIINAFSGTINFGTFIAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAIPSLHPVACGNKISCEGPSVGQILFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKKGINSFFNWYFFTFTFAQIISLTAVVYIQSNVSWTIGLIIPVALMFLACVIFFAGDRLYVKVKASGSPLAGIARVIAAAIKKRGLKPVKQPWVNLYNHIPSNYANTTLKYTDQFRFLDKAAIMTPEEKLNSDGTASDPWKLCTLQQVEEVKCIVRVIPIWFASTIYYLAITIQMTYPVFQALQSDRRLGSGGFRIPAATYVVFLMTGMTVFIIFYDRVLVPSLRRVTGLETGISLLQRIGAGFTFAIMSLLVSGFIEERRRNFALTKPTLGMAPRTGEISSMSALWLIPQLTLAGIAEAFAAIGQMEFYYKQFPENMKSFAGSIFYVGAGVSSYLASFLISTVHRTTAHSPSGNWLAEDLNKAKLDYFYFMLTGLMVVNMAYFLLMARWYRYKGGNDEDITEIETNEEETKQQQLQDKNSV

Source

organism	Arabidopsis thaliana
common_name	thale cress
ncbi_taxonomy_id	3702
host_organism	Homo sapiens

Entity 2 non-polymer

description	CHOLESTEROL
formula_weight	386.7 kDa
src_method	syn
entity_count	4

Entity 3 non-polymer

description	(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate
formula_weight	760.1 kDa
src_method	syn
entity_count	10

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.220 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.22 Å
resolution_method	—
num_particles	72964

fit	/app/data/saxs_computation/ui/9ui6/9ui6.fit
pddf	/app/data/pr_computation/ui/9ui6/9ui6.pr.out
profile	/app/data/saxs_computation/ui/9ui6/9ui6.dat

transporter

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D