← Back to search

9ukv

JM Complex - E. coli MurJ, Levivirus M lysis protein LysM (SglM)

Method: ELECTRON MICROSCOPY D_max: 74.9 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9ukv
deposition_date	2025-04-18
title	JM Complex - E. coli MurJ, Levivirus M lysis protein LysM (SglM)
keywords	Phage, Lysis protein, Complex, VIRAL PROTEIN; VIRAL PROTEIN
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	24.98 Å
rg_electron	23.93 Å
i0	46174000.00
molecular_weight	59385.0 kDa
excluded_volume	77319 Å³
envelope_volume	92166 Å³
shell_volume	31455 Å³
envelope_diameter	76.6 Å
shell_rg	31.85 Å
envelope_rg	23.74 Å
shape_rg	23.93 Å
total_rg	24.91 Å
total_atoms	4188
n_residues	548
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	74.9 Å
rg_real	24.83 Å
rg_real_error	0.44 Å
i0_real	4.6170e+07
i0_real_error	6.4780e+05
rg_reciprocal	24.88 Å
i0_reciprocal	46180000.0000
total_estimate	0.9099
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	33.3 Å
skewness	0.081
kurtosis	-0.515
angular_range	— – 0.3200 Å⁻¹
current_alpha	0.0000
highest_alpha	6158000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.948; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.984; Smooth: 0.998

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

Entity 1 polymer

description	Lipid II flippase MurJ
formula_weight	58100.9 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	4188

MANLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVAFKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTAPGFADTADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGVLQLVYQLPHLKKIGMLVLPRINFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFLASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFASGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQYGKFTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLILTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQKIFTPQPGWMAFLLRLVVAVLVMSGVLLGMLHIMPEWSLGTMPWRLLRLMAVVLAGIAAYFAALAVLGFKVKEFARRTVDYKDHDGDYKDHDIDYKDDDDK

Source

organism	Escherichia coli
ncbi_taxonomy_id	562
host_organism	Escherichia coli

Entity 2 polymer

description	Lysis protein
formula_weight	5535.4 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

MKYIINLAFCVLLLVAGDSIAYRVSQYLAPLVDTFTKHHHHHHHHHH

Source

organism	Enterobacteria phage M
ncbi_taxonomy_id	1235640
host_organism	Escherichia coli

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	triclinic

resolution	3.05 Å
resolution_method	—
num_particles	371016

fit	/app/data/saxs_computation/uk/9ukv/9ukv.fit
pddf	/app/data/pr_computation/uk/9ukv/9ukv.pr.out
profile	/app/data/saxs_computation/uk/9ukv/9ukv.dat

JM Complex - E. coli MurJ, Levivirus M lysis protein LysM (SglM)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)