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9uu3

Cryo-EM structure of the maize CER6-GL2 complex bound with CoA

Method: ELECTRON MICROSCOPY D_max: 139.2 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9uu3
deposition_date	2025-05-05
title	Cryo-EM structure of the maize CER6-GL2 complex bound with CoA
keywords	Complex, CoA, PLANT PROTEIN; PLANT PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	43.14 Å
rg_electron	42.98 Å
i0	517252000.00
molecular_weight	186210.0 kDa
excluded_volume	232850 Å³
envelope_volume	311640 Å³
shell_volume	60498 Å³
envelope_diameter	141.1 Å
shell_rg	47.74 Å
envelope_rg	43.02 Å
shape_rg	43.01 Å
total_rg	43.11 Å
total_atoms	13084
n_residues	1676
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	139.2 Å
rg_real	43.12 Å
rg_real_error	1.42 Å
i0_real	5.1730e+08
i0_real_error	1.0590e+07
rg_reciprocal	43.14 Å
i0_reciprocal	517300000.0000
total_estimate	0.8966
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	41.4 Å
skewness	0.207
kurtosis	-0.752
angular_range	— – 0.1850 Å⁻¹
current_alpha	0.0000
highest_alpha	147500000.0000
n_real_points	38
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.919; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.984; Smooth: 0.912

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Protein ECERIFERUM 26-like
formula_weight	46865.0 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,D
atom_count	13084

DYKDDDDKMVFEQHEEEAVAPGAVHGHRLSTVVPSSVTGEVDYALADADLAFKLHYLRGVYYYRSGDGLATKVLKDPMFPWLDDHFPVAGRVRRAEAEGDGAPRRPYIKCNDCGVRIVEARCDRDMAEWIRDAAPGRIRQLCYDKVLGPELFFSPLLYVQITNFKCGGLALGFSWAHLIGDIPSAATCFNKWAQILSGKKPEATVLTPPNQPLQGQSPAAPRSVKQVGPMEDLWLVPAGRDMACYSFHVSDAVLKKLHQQQNGRQDAAAGTFELVSALVWQAVAKIRGDVDTVTVVRADAAARSGKSLANEMKVGYVESAGSSPAKTDVAELAALLAKNVVDETAAVAAFQGDVLVYGGANLTLVDMEQVDLYGLEIKGQRPVYVEYGMDGVGDEGAVLVQPDADGRGRLVTVVLPGDEIDSLRAALGSALHVA

Source

organism	Zea mays
common_name	Maize
ncbi_taxonomy_id	4577
host_organism	Spodoptera frugiperda

Entity 2 polymer

description	3-ketoacyl-CoA synthase
formula_weight	56413.4 kDa
ec_number	2.3.1.-
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	C,B

HHHHHHMPSGGVFSGSVNLKHVKLGYQYLVNHFLTLLLVPVMAATALELARLGPGELLSLWRSLELDLVHILCSAFLVVFVGTVYVMSRPRPVYLVDYACYKPPASCRVPFATFMEHTRLISDDDKSVRFQTRILERSGLGEDTCLPPANHYIPPNPSMEASRAEAQLVIFSAIDDLVRRTGLKPKDIDILVVNCSLFSPTPSLSAMIINKYKLRSNIRSFNLSGMGCSAGLISIDLARDMLQVHPNSNALVVSTEIITPNFYQGSRRDMLLPNCLFRMGAAAILLSNRRREARRAKYRLVHVVRTHKGADDRAYRCVYEEEDEQGFSGISLSKELMAIAGDALKSNITTIGPLVLPMSEQLLFFFRLVGRKLVNKGWRPYIPDFKLAFEHFCIHAGGRAVIDELQKNLQLSPRHVEASRMTLHRFGNTSSSSLWYELAYIEAKGRMRRGDRVWQIGFGSGFKCNSAVWKCLRSIKTPTNGPWDDCIHRYPVDVPEVVKL

Source

organism	Zea mays
common_name	Maize
ncbi_taxonomy_id	4577
host_organism	Spodoptera frugiperda

Entity 3 non-polymer

description	COENZYME A
formula_weight	767.5 kDa
src_method	syn
entity_count	2

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.01 Å
resolution_method	—
num_particles	47973

fit	/app/data/saxs_computation/uu/9uu3/9uu3.fit
pddf	/app/data/pr_computation/uu/9uu3/9uu3.pr.out
profile	/app/data/saxs_computation/uu/9uu3/9uu3.dat

Cryo-EM structure of the maize CER6-GL2 complex bound with CoA

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)