SAXSdb — 9ux7

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1. Structure Basics

entry_id	9ux7
deposition_date	2025-05-13
title	CryoEM Structure of LmuAB-DNA complex
keywords	complex, anti-phage system, IMMUNE SYSTEM; IMMUNE SYSTEM
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	49.96 Å
rg_electron	49.06 Å
i0	603551000.00
molecular_weight	193080.0 kDa
excluded_volume	237430 Å³
envelope_volume	352870 Å³
shell_volume	62202 Å³
envelope_diameter	172.8 Å
shell_rg	50.59 Å
envelope_rg	48.55 Å
shape_rg	49.00 Å
total_rg	49.28 Å
total_atoms	13495
n_residues	1510
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	173.0 Å
rg_real	50.10 Å
rg_real_error	1.77 Å
i0_real	6.0360e+08
i0_real_error	1.1200e+07
rg_reciprocal	49.96 Å
i0_reciprocal	603400000.0000
total_estimate	0.8143
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	64.9 Å
skewness	0.321
kurtosis	-0.354
angular_range	— – 0.1600 Å⁻¹
current_alpha	0.0001
highest_alpha	30910000.0000
n_real_points	33
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.871; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.967; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Lamassu protein LmuB
formula_weight	66508.0 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	13495

MIIIAFSILDFKNKEAQNFDFKAGTNLIVSKGNTKGKSSLLKSMYYTLGFDVHQFPSNWNINFMYFQIEVLINNVKYNITRQKNIFRVSDVEVPLNVKEYSEWLQHKLEIKMQLANTHTKHLYEAYSSAVILPFYIDQDDSWDGGIYRNVTNTLNQYTRIPADIFKSVFNLSNYELLELQNSLTNYSKEKNTVVSTIKSLLNVLEDYRHENADVPTVSKIDKIALNKDIDRYLQMQNELNEQIVKYKMKLLNKQEMLDLQKQELSELEQLLKMNKKRYNSIETECQYCHSKLTKEQSLTRLDLSNNYFEISLLKEEIEKEVVKLTNEIIIFESQQNSIESKIDEIHRRIQNSKDLLTIDDYVKATAKKEASNELESLVDKQVLSKYNLEEKIKVLRREINKLKKEKESLREIIERDYTDLVFEIKKVLNDLNDTKLDLSELNLDELKFLEFKKISGSGMDKNKKFLAYYLIYFSLLRKYSSYIIPFCMDSFIKNEITGETAKKMFEAIEKYFFDTNQSFFSIVSENLKHLEFVDSYNKINVEGKLLVRDKYDEIALKFKFDS

Source

organism	Bacillus sp. nio-1130
ncbi_taxonomy_id	1761765
host_organism	Escherichia coli

Entity 2 polymer

description	Lamassu protein LmuA
formula_weight	36103.8 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	C

MIEIDNGGAIALKGFNYQKASIILVMIHNFEKDNFIVIPESQEDFEIHLGQDTYFIQVKGTKKLSIGKLKSRPSGKASIIEKNLSPGNVGDIRKIFLWDIAELTKNELISQEGTLIPMKHSLSLKQKTEIINTLDLDEEQKNRMNNQYIYITPFPNDINLALTFLKGEMVNENLLVSNDRAKLVLGELSLEIDRKSEIVVSTESDVERKKIDGNYLKQVFINIKQKEMFDEILDNLSINTIMKKKVKKEKLRIPLLYQNIKEQTKQKADINLLMRENDEGAINYLRDLLVEIVPDMKPTELSIALAIDCFCELGE

Source

organism	Bacillus sp. nio-1130
ncbi_taxonomy_id	1761765
host_organism	Escherichia coli

Entity 3 polymer

description	DNA (41-MER)
formula_weight	12594.1 kDa
src_method	man
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	D

CGCTTTATCAGAAGCCAGACATTAACGCTTCTGGAGAAACT

Source

organism	synthetic construct
ncbi_taxonomy_id	32630
host_organism	synthetic construct

Entity 4 polymer

description	DNA (41-MER)
formula_weight	12647.1 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	E

AGTTTCTCCAGAAGCGTTAATGTCTGGCTTCTGATAAAGCG

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.730 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.73 Å
resolution_method	—
num_particles	437756

fit	/app/data/saxs_computation/ux/9ux7/9ux7.fit
pddf	/app/data/pr_computation/ux/9ux7/9ux7.pr.out
profile	/app/data/saxs_computation/ux/9ux7/9ux7.dat

CryoEM Structure of LmuAB-DNA complex

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)