SAXSdb — 9ux8

▼

1. Structure Basics

entry_id	9ux8
deposition_date	2025-05-13
title	CryoEM Structure of LmuAB Apo State
keywords	complex, anti-phage system, IMMUNE SYSTEM; IMMUNE SYSTEM
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	47.11 Å
rg_electron	46.67 Å
i0	380671000.00
molecular_weight	167800.0 kDa
excluded_volume	212950 Å³
envelope_volume	305510 Å³
shell_volume	55487 Å³
envelope_diameter	144.9 Å
shell_rg	50.95 Å
envelope_rg	44.87 Å
shape_rg	46.67 Å
total_rg	46.87 Å
total_atoms	11820
n_residues	1428
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	148.3 Å
rg_real	46.90 Å
rg_real_error	1.40 Å
i0_real	3.8070e+08
i0_real_error	7.4050e+06
rg_reciprocal	47.11 Å
i0_reciprocal	380800000.0000
total_estimate	0.8966
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	67.4 Å
skewness	-0.007
kurtosis	-0.773
angular_range	— – 0.1650 Å⁻¹
current_alpha	0.0000
highest_alpha	20270000.0000
n_real_points	34
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.912; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.918

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

Entity 1 polymer

description	Lamassu protein LmuB
formula_weight	66508.0 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	11820

MIIIAFSILDFKNKEAQNFDFKAGTNLIVSKGNTKGKSSLLKSMYYTLGFDVHQFPSNWNINFMYFQIEVLINNVKYNITRQKNIFRVSDVEVPLNVKEYSEWLQHKLEIKMQLANTHTKHLYEAYSSAVILPFYIDQDDSWDGGIYRNVTNTLNQYTRIPADIFKSVFNLSNYELLELQNSLTNYSKEKNTVVSTIKSLLNVLEDYRHENADVPTVSKIDKIALNKDIDRYLQMQNELNEQIVKYKMKLLNKQEMLDLQKQELSELEQLLKMNKKRYNSIETECQYCHSKLTKEQSLTRLDLSNNYFEISLLKEEIEKEVVKLTNEIIIFESQQNSIESKIDEIHRRIQNSKDLLTIDDYVKATAKKEASNELESLVDKQVLSKYNLEEKIKVLRREINKLKKEKESLREIIERDYTDLVFEIKKVLNDLNDTKLDLSELNLDELKFLEFKKISGSGMDKNKKFLAYYLIYFSLLRKYSSYIIPFCMDSFIKNEITGETAKKMFEAIEKYFFDTNQSFFSIVSENLKHLEFVDSYNKINVEGKLLVRDKYDEIALKFKFDS

Source

organism	Bacillus sp. nio-1130
ncbi_taxonomy_id	1761765
host_organism	Escherichia coli

Entity 2 polymer

description	Lamassu protein LmuA
formula_weight	36103.8 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	C

MIEIDNGGAIALKGFNYQKASIILVMIHNFEKDNFIVIPESQEDFEIHLGQDTYFIQVKGTKKLSIGKLKSRPSGKASIIEKNLSPGNVGDIRKIFLWDIAELTKNELISQEGTLIPMKHSLSLKQKTEIINTLDLDEEQKNRMNNQYIYITPFPNDINLALTFLKGEMVNENLLVSNDRAKLVLGELSLEIDRKSEIVVSTESDVERKKIDGNYLKQVFINIKQKEMFDEILDNLSINTIMKKKVKKEKLRIPLLYQNIKEQTKQKADINLLMRENDEGAINYLRDLLVEIVPDMKPTELSIALAIDCFCELGE

Source

organism	Bacillus sp. nio-1130
ncbi_taxonomy_id	1761765
host_organism	Escherichia coli

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.710 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.71 Å
resolution_method	—
num_particles	447569

fit	/app/data/saxs_computation/ux/9ux8/9ux8.fit
pddf	/app/data/pr_computation/ux/9ux8/9ux8.pr.out
profile	/app/data/saxs_computation/ux/9ux8/9ux8.dat

CryoEM Structure of LmuAB Apo State

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)