SAXSdb — 9v6l

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1. Structure Basics

entry_id	9v6l
deposition_date	2025-05-27
title	Psl polysaccharide related protein structures
keywords	complex, PROTEIN TRANSPORT; PROTEIN TRANSPORT
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	92.58 Å
rg_electron	96.35 Å
i0	4914280000.00
molecular_weight	594060.0 kDa
excluded_volume	745120 Å³
envelope_volume	1176700 Å³
shell_volume	114720 Å³
envelope_diameter	314.4 Å
shell_rg	63.70 Å
envelope_rg	95.94 Å
shape_rg	96.36 Å
total_rg	95.89 Å
total_atoms	41816
n_residues	5312
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	256.8 Å
rg_real	88.87 Å
rg_real_error	1.29 Å
i0_real	4.7420e+09
i0_real_error	9.6670e+07
rg_reciprocal	84.68 Å
i0_reciprocal	4795000000.0000
total_estimate	0.7832
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	60.4 Å
skewness	0.455
kurtosis	-0.935
angular_range	— – 0.0850 Å⁻¹
current_alpha	0.8515
highest_alpha	298200000.0000
n_real_points	18
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.545; Stabil: 0.911; Sysdev: 1.000; Positv: 1.000; Valcen: 0.819; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	Biofilm formation protein PslE
formula_weight	75699.8 kDa
ec_number	2.7.10.-
src_method	man
entity_count	8

Polymer

type	polypeptide(L)
strand_id	A,B,E,I,M,P,S,W
atom_count	41816

MIEIRSLRDLLRLLFIYQREFKLAALSAVVIIVLGAFLLPAKYESNARLLVKPGRDSTLPIEISNRQALVMPSTQRDPIVDEERLLTGRPIVRQVAERYLEVLANRPPPEGLWKRTKFYVKKAIGAVFDGIRVTLETFGVIEETTAVERLAKDLEKKFEVTHAAGSTVMEISFTWSEPEVAQEVVKAWIEIYMEERTQALGRKSLYAFYEAQTADSAAQIKSYKAQILKHLNEIGASSIEDRLQDLSERINVLRGERFNSIRLIASSDSALESTRQQLKGLPREIVTVRQIALNPAQQDLRRLLNQKRLERADMMRTYTDDAPPVKALDASIRALEKEVQDEGATVQSSEDRAPNTLTTHLERVLLDETSNNAALRTQLAEQEKQLAELEAQRREALDIEPTLARLQRELNATERNYALYVDSLEKSRIDRELDKSQISNISVIEEATYNPGRIFPKTLLMLFLAVPFGLAVGLLVVYLCYLLDQRIHDGGLVEEKFGLPLWTTLPELSNSTAESSNAFTASIYRLYGLLPYARIEEKGLTLGLTSARHGEGVTFIIEQLRRLLEENGVRVRIGGEPAQPGEVVLLDAPALLDSREAFIALRRADLIALVVEAQKSTVPVVEHALTILTTAFGKVDGIIINRRRFEVPSKVLQTIARYRSAFWSHPQFEK

Source

organism	Pseudomonas aeruginosa
ncbi_taxonomy_id	287
host_organism	Escherichia coli

Entity 2 polymer

description	Biofilm formation protein PslD
formula_weight	27938.2 kDa
src_method	man
entity_count	8

Polymer

type	polypeptide(L)
strand_id	D,G,K,L,O,R,V,Y

MKRTLLMLAMLALAACNTPARIPAPDSDTVDSGKRALEELARLPPAMERVRVGDTLRIVRDAGEMPTLSAFNVATIYELTLYTVLNDGSIYYPFIGRIQAAHRTPQEIANELTTKLAPIYREPRVTVNINQAPGNTVFVGGAVRNPSAVPIPAANNMEQAILGAGGILPVGDARRVALMREDSEGRYHAYFLDFSQLMKIGPEGRKPLAMQRGDIVFVPKSMVGDRIEGVDVYLNQLLPFAKSIGVGVSYTVNNDR

Source

organism	Pseudomonas aeruginosa
ncbi_taxonomy_id	287
host_organism	Escherichia coli

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.060 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.06 Å
resolution_method	—
num_particles	144299

fit	/app/data/saxs_computation/v6/9v6l/9v6l.fit
pddf	/app/data/pr_computation/v6/9v6l/9v6l.pr.out
profile	/app/data/saxs_computation/v6/9v6l/9v6l.dat

Psl polysaccharide related protein structures

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)