SAXSdb — 9v8w

▼

1. Structure Basics

entry_id	9v8w
deposition_date	2025-05-30
title	membrane protein S6A8 with RGX
keywords	membrane protein S6A8, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	23.65 Å
rg_electron	22.83 Å
i0	88207200.00
molecular_weight	53009.0 kDa
excluded_volume	53303 Å³
envelope_volume	82091 Å³
shell_volume	29237 Å³
envelope_diameter	85.3 Å
shell_rg	30.71 Å
envelope_rg	23.18 Å
shape_rg	22.83 Å
total_rg	23.52 Å
total_atoms	4029
n_residues	505
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	80.5 Å
rg_real	23.60 Å
rg_real_error	0.53 Å
i0_real	8.8210e+07
i0_real_error	1.2320e+06
rg_reciprocal	23.62 Å
i0_reciprocal	88210000.0000
total_estimate	0.7912
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	28.9 Å
skewness	0.367
kurtosis	-0.153
angular_range	— – 0.3350 Å⁻¹
current_alpha	0.0000
highest_alpha	16320000.0000
n_real_points	65
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.763; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.993; Smooth: 0.000

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (5)

Entity 1 polymer

description	Sodium- and chloride-dependent creatine transporter 1
formula_weight	70568.3 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	4039

MAKKSAENGIYSVSGDEKKGPLIAPGPDGAPAKGDGPVGLGTPGGRLAVPPRETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYVLIALVGGIPIFFLEISLGQFMKAGSINVWNICPLFKGLGYASMVIVFYCNTYYIMVLAWGFYYLVKSFTTTLPWATCGHTWNTPDCVEIFRHEDCANASLANLTCDQLADRRSPVIEFWENKVLRLSGGLEVPGALNWEVTLCLLACWVLVYFCVWKGVKSTGKIVYFTATFPYVVLVVLLVRGVLLPGALDGIIYYLKPDWSKLGSPQVWIDAGTQIFFSYAIGLGALTALGSYNRFNNNCYKDAIILALINSGTSFFAGFVVFSILGFMAAEQGVHISKVAESGPGLAFIAYPRAVTLMPVAPLWAALFFFMLLLLGLDSQFVGVEGFITGLLDLLPASYYFRFQREISVALCCALCFVIDLSMVTDGGMYVFQLFDYYSASGTTLLWQAFWECVVVAWVYGADRFMDDIACMIGYRPCPWMKWCWSFFTPLVCMGIFIFNVVYYEPLVYNNTYVYPWWGEAMGWAFALSSMLCVPLHLLGCLLRAKGTMAERWQHLTQPIWGLHHLEYRAQDADVRGLTTLTPVSESSKVVVVESVM

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

Entity 2 non-polymer

description	SODIUM ION
formula_weight	23.0 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	CHLORIDE ION
formula_weight	35.5 kDa
src_method	syn
entity_count	1

Entity 4 non-polymer

description	Ompenaclid
formula_weight	131.1 kDa
src_method	syn
entity_count	1

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	10

▶

6. Citations (1)

▶

resolution	2.75 Å
resolution_method	—
num_particles	175122

fit	/app/data/saxs_computation/v8/9v8w/9v8w.fit
pddf	/app/data/pr_computation/v8/9v8w/9v8w.pr.out
profile	/app/data/saxs_computation/v8/9v8w/9v8w.dat

membrane protein S6A8 with RGX

SAXS Profile

P(r) Distribution