9v91
Cryo-EM structure of renal amyloid fibril from an immunoglobulin light chain amyloidosis patient in polymorph B
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9v91 |
| deposition_date | 2025-05-30 |
| title | Cryo-EM structure of renal amyloid fibril from an immunoglobulin light chain amyloidosis patient in polymorph B |
| keywords | Amyloid fibril, PROTEIN FIBRIL; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 41.24 Å |
| rg_electron | 41.24 Å |
| i0 | 46426900.00 |
| molecular_weight | 50936.0 kDa |
| excluded_volume | 62108 ų |
| envelope_volume | 88421 ų |
| shell_volume | 20622 ų |
| envelope_diameter | 145.3 Å |
| shell_rg | 38.29 Å |
| envelope_rg | 41.77 Å |
| shape_rg | 41.22 Å |
| total_rg | 41.13 Å |
| total_atoms | 3588 |
| n_residues | 480 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 140.2 Å |
| rg_real | 41.87 Å |
| rg_real_error | 2.22 Å |
| i0_real | 4.6430e+07 |
| i0_real_error | 9.0280e+05 |
| rg_reciprocal | 41.25 Å |
| i0_reciprocal | 46400000.0000 |
| total_estimate | 0.6959 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 3 |
| r_peak_primary | 25.8 Å |
| skewness | 0.509 |
| kurtosis | -0.663 |
| angular_range | — – 0.1900 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 1559000.0000 |
| n_real_points | 39 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.483; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.260; Smooth: 0.334 |