9v9c
Cryo-EM structure of human TNFR1 DD filament
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9v9c |
| deposition_date | 2025-05-30 |
| title | Cryo-EM structure of human TNFR1 DD filament |
| keywords | Death doamin, PROTEIN FIBRIL; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 39.29 Å |
| rg_electron | 38.95 Å |
| i0 | 657190000.00 |
| molecular_weight | 204600.0 kDa |
| excluded_volume | 254690 ų |
| envelope_volume | 328830 ų |
| shell_volume | 68942 ų |
| envelope_diameter | 143.3 Å |
| shell_rg | 45.51 Å |
| envelope_rg | 39.01 Å |
| shape_rg | 38.96 Å |
| total_rg | 39.29 Å |
| total_atoms | 14360 |
| n_residues | 1740 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 131.7 Å |
| rg_real | 39.34 Å |
| rg_real_error | 0.94 Å |
| i0_real | 6.5720e+08 |
| i0_real_error | 1.0530e+07 |
| rg_reciprocal | 39.32 Å |
| i0_reciprocal | 657200000.0000 |
| total_estimate | 0.8604 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 42.8 Å |
| skewness | 0.456 |
| kurtosis | -0.178 |
| angular_range | — – 0.2000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 313700000.0000 |
| n_real_points | 41 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.778; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.847 |