The MIDN Catch-IRF4 (A8M) fusion protein

entry_id	9veh
deposition_date	2025-06-09
last_revision	2026-02-04
title	The MIDN Catch-IRF4 (A8M) fusion protein
keywords	Midnolin, IRF4, proteasome, NUCLEAR PROTEIN; NUCLEAR PROTEIN
method	X-RAY DIFFRACTION

rg_guinier	15.87 Å
rg_electron	14.43 Å
i0	4034850.00
molecular_weight	13853.0 kDa
excluded_volume	17191 ų
envelope_volume	20109 ų
shell_volume	12105 ų
envelope_diameter	51.9 Å
shell_rg	19.82 Å
envelope_rg	14.65 Å
shape_rg	14.45 Å
total_rg	15.50 Å
total_atoms	970
n_residues	128
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	53.7 Å
rg_real	15.80 Å
rg_real_error	0.34 Å
i0_real	4.0350e+06
i0_real_error	4.3010e+04
rg_reciprocal	15.81 Å
i0_reciprocal	4035000.0000
total_estimate	0.7026
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	19.7 Å
skewness	0.186
kurtosis	-0.312
angular_range	— – 0.5000 Å−1
current_alpha	0.0000
highest_alpha	479500.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.795; Stabil: 1.000; Sysdev: 0.256; Positv: 1.000; Valcen: 0.997; Smooth: 0.979

Unit Cell

length_a	87.784 Å
length_b	87.784 Å
length_c	73.536 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

Symmetry

space_group	P 65 2 2
int_tables_number	179
crystal_system	hexagonal

Refinement

resolution	2.000 Å
resolution_low	25.340 Å
r_factor	0.2477
r_work	0.2435
r_free	0.2873

Diffraction

temperature

193.0 K

Files (7)

• pr_distribution /app/data/pr_computation/ve/9veh/pr_distribution.json
• pr_output /app/data/pr_computation/ve/9veh/9veh.pr.out
• pr_plot /app/data/visualization/pr_computation/ve/9veh/9veh_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/ve/9veh/9veh.dat
• saxs_fit /app/data/saxs_computation/ve/9veh/9veh.fit
• saxs_log /app/data/saxs_computation/ve/9veh/9veh.log
• saxs_plot /app/data/visualization/saxs_computation/ve/9veh/9veh_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/ve/9veh/9veh.fit
pddf	/app/data/pr_computation/ve/9veh/9veh.pr.out
profile	/app/data/saxs_computation/ve/9veh/9veh.dat