← Back to search

9vie

cryo-EM structure of alligator haemoglobin in the T-like conformation

Method: ELECTRON MICROSCOPY D_max: 59.9 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9vie
deposition_date	2025-06-18
last_revision	2025-07-23
title	cryo-EM structure of alligator haemoglobin in the T-like conformation
keywords	haemoglobin, OXYGEN BINDING; OXYGEN BINDING
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	20.65 Å
rg_electron	19.32 Å
i0	18790200.00
molecular_weight	33633.0 kDa
excluded_volume	42310 Å³
envelope_volume	48117 Å³
shell_volume	20630 Å³
envelope_diameter	59.7 Å
shell_rg	25.69 Å
envelope_rg	19.38 Å
shape_rg	19.31 Å
total_rg	20.24 Å
total_atoms	2373
n_residues	287
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	59.9 Å
rg_real	20.51 Å
rg_real_error	0.26 Å
i0_real	1.8790e+07
i0_real_error	1.9200e+05
rg_reciprocal	20.54 Å
i0_reciprocal	18790000.0000
total_estimate	0.7422
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	26.9 Å
skewness	0.080
kurtosis	-0.594
angular_range	— – 0.3850 Å⁻¹
current_alpha	0.0000
highest_alpha	3234000.0000
n_real_points	70
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.980; Stabil: 1.000; Sysdev: 0.242; Positv: 1.000; Valcen: 0.991; Smooth: 0.987

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (4)

Entity 1 polymer

description	Hemoglobin subunit alpha
formula_weight	15891.4 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	2373

MVLSMEDKSNVKAIWGKASGHLEEYGAEALERMFCAYPQTKIYFPHFDMSHNSAQIRAHGKKVFSALHEAVNHIDDLPGALCRLSELHAHSLRVDPVNFKFLAHCVLVVFAIHHPSALSPEIHASLDKFLCAVSAVLTSKYR

Entity 2 polymer

description	Hemoglobin subunit beta
formula_weight	16641.2 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

ASFDAHERKFIVDLWAKVDVAQCGADALSRMLIVYPWKRRYFEHFGKMCNAHDILHNSKVQEHGKKVLASFGEAVKHLDNIKGHFANLSKLHCEKFHVDPENFKLLGDIIIIVLAAHHPEDFSVECHAAFQKLVRQVAAALAAEYH

Entity 3 non-polymer

description	PROTOPORPHYRIN IX CONTAINING FE
formula_weight	616.5 kDa
src_method	syn
entity_count	2

Entity 4 non-polymer

description	CARBON MONOXIDE
formula_weight	28.0 kDa
src_method	syn
entity_count	2

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.380 Å
resolution_low	2.380 Å
r_factor	0.3352
r_work	0.3352
r_free	—

resolution	2.38 Å
resolution_method	—
num_particles	238763

fit	/app/data/saxs_computation/vi/9vie/9vie.fit
pddf	/app/data/pr_computation/vi/9vie/9vie.pr.out
profile	/app/data/saxs_computation/vi/9vie/9vie.dat

cryo-EM structure of alligator haemoglobin in the T-like conformation

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 non-polymer

Entity 4 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)