9vp3
CryoEM structure of cyclised H-pilus (D69N)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vp3 |
| deposition_date | 2025-07-02 |
| title | CryoEM structure of cyclised H-pilus (D69N) |
| keywords | pilus, conjugation, filament, PROTEIN FIBRIL; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 16.27 Å |
| rg_electron | 15.69 Å |
| i0 | 1113850.00 |
| molecular_weight | 7850.0 kDa |
| excluded_volume | 10206 ų |
| envelope_volume | 12874 ų |
| shell_volume | 7897 ų |
| envelope_diameter | 55.4 Å |
| shell_rg | 19.32 Å |
| envelope_rg | 15.85 Å |
| shape_rg | 15.78 Å |
| total_rg | 16.35 Å |
| total_atoms | 547 |
| n_residues | 69 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 57.8 Å |
| rg_real | 16.49 Å |
| rg_real_error | 0.46 Å |
| i0_real | 1.1140e+06 |
| i0_real_error | 1.3340e+04 |
| rg_reciprocal | 16.47 Å |
| i0_reciprocal | 1114000.0000 |
| total_estimate | 0.8238 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 14.8 Å |
| skewness | 0.480 |
| kurtosis | -0.391 |
| angular_range | — – 0.4900 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 82970.0000 |
| n_real_points | 79 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.731; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.535; Smooth: 0.978 |