9vp4
CryoEM structure of cyclised H-pilus (D69R)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vp4 |
| deposition_date | 2025-07-02 |
| title | CryoEM structure of cyclised H-pilus (D69R) |
| keywords | pilus, conjugation, filament, PROTEIN FIBRIL; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 16.32 Å |
| rg_electron | 15.76 Å |
| i0 | 1129840.00 |
| molecular_weight | 7894.0 kDa |
| excluded_volume | 10270 ų |
| envelope_volume | 12979 ų |
| shell_volume | 7939 ų |
| envelope_diameter | 55.4 Å |
| shell_rg | 19.24 Å |
| envelope_rg | 15.94 Å |
| shape_rg | 15.84 Å |
| total_rg | 16.40 Å |
| total_atoms | 550 |
| n_residues | 69 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 57.4 Å |
| rg_real | 16.53 Å |
| rg_real_error | 0.42 Å |
| i0_real | 1.1300e+06 |
| i0_real_error | 1.4110e+04 |
| rg_reciprocal | 16.51 Å |
| i0_reciprocal | 1130000.0000 |
| total_estimate | 0.8193 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 14.7 Å |
| skewness | 0.477 |
| kurtosis | -0.396 |
| angular_range | — – 0.4900 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 87490.0000 |
| n_real_points | 79 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.737; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.565; Smooth: 0.871 |