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9vvs

NAD(P)-dependent oxidoreductase from Kutzneria albida

Method: X-RAY DIFFRACTION D_max: 96.1 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9vvs
deposition_date	2025-07-16
title	NAD(P)-dependent oxidoreductase from Kutzneria albida
keywords	imine reductase, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	28.68 Å
rg_electron	28.03 Å
i0	60419300.00
molecular_weight	59512.0 kDa
excluded_volume	73833 Å³
envelope_volume	88436 Å³
shell_volume	28162 Å³
envelope_diameter	101.0 Å
shell_rg	33.56 Å
envelope_rg	28.05 Å
shape_rg	28.03 Å
total_rg	28.54 Å
total_atoms	4186
n_residues	571
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	96.1 Å
rg_real	28.88 Å
rg_real_error	0.58 Å
i0_real	6.0420e+07
i0_real_error	9.3500e+05
rg_reciprocal	28.80 Å
i0_reciprocal	60420000.0000
total_estimate	0.8456
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	26.2 Å
skewness	0.554
kurtosis	-0.235
angular_range	— – 0.2750 Å⁻¹
current_alpha	0.0001
highest_alpha	24500000.0000
n_real_points	56
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.780; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.790; Smooth: 0.859

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Dehydrogenase
formula_weight	31809.8 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	B,A
atom_count	4404

MGSSHHHHHHSSGLVPRGSHMDKRERVTVLGLGRMGAALAGALLAAGHPTTVWNRSAAKAGDLVARGAVLAGTAAEAVRASEVVVVCVTDYDVAGDLLGPLAGELAGRALINLTSGSPEQARRSADWAAEHGIDYLDGTIMTQPQGIGQPGSVLLLSGSAEVHSGRKALIELWGDGDYLGADAGLSALYDLALLGVMWSTIASFLHGAALLGTEDVTAQQFLPKVERWLGAVASFLPGIAAQADSGDYATDHGGLDINVAGLDLLARVSRAQGIGTDVPAALHELYARRLAQGSANDGLASLIDTIRRG

Source

organism	Kutzneria albida DSM 43870
ncbi_taxonomy_id	1449976
host_organism	Escherichia coli

Entity 2 non-polymer

description	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
formula_weight	745.4 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	SODIUM ION
formula_weight	23.0 kDa
src_method	syn
entity_count	1

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	218

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6. Citations (1)

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length_a	117.710 Å
length_b	117.710 Å
length_c	98.987 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	P 43 21 2
int_tables_number	96
crystal_system	—

resolution	2.680 Å
resolution_low	12.716 Å
r_factor	—
r_work	0.1876
r_free	0.2477

fit	/app/data/saxs_computation/vv/9vvs/9vvs.fit
pddf	/app/data/pr_computation/vv/9vvs/9vvs.pr.out
profile	/app/data/saxs_computation/vv/9vvs/9vvs.dat

NAD(P)-dependent oxidoreductase from Kutzneria albida

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction