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9vw7

NAD(P)-dependent oxidoreductase from Kutzneria albida

Method: X-RAY DIFFRACTION D_max: 99.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9vw7
deposition_date	2025-07-16
title	NAD(P)-dependent oxidoreductase from Kutzneria albida
keywords	imine reductase, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	28.81 Å
rg_electron	28.12 Å
i0	61479300.00
molecular_weight	60039.0 kDa
excluded_volume	74513 Å³
envelope_volume	89356 Å³
shell_volume	28360 Å³
envelope_diameter	102.4 Å
shell_rg	33.57 Å
envelope_rg	28.20 Å
shape_rg	28.11 Å
total_rg	28.63 Å
total_atoms	4218
n_residues	573
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	99.3 Å
rg_real	29.03 Å
rg_real_error	0.97 Å
i0_real	6.1480e+07
i0_real_error	1.0850e+06
rg_reciprocal	28.94 Å
i0_reciprocal	61480000.0000
total_estimate	0.8264
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	27.1 Å
skewness	0.563
kurtosis	-0.225
angular_range	— – 0.2750 Å⁻¹
current_alpha	0.0000
highest_alpha	26110000.0000
n_real_points	56
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.718; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.709; Smooth: 0.878

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4. Crystallography & Experiment

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5. Entities & Polymer Info (6)

Entity 1 polymer

description	Dehydrogenase
formula_weight	31741.8 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	4520

MGSSHHHHHHSSGLVPRGSHMDKRERVTVLGLGRMGAALAGALLAAGHPTTVWNRSAAKAGDLVARGAVLAGTAAEAVRASEVVVVCVTDYDVAGDLLGPLAGELAGRALINLTSGSPEQARRSADWAAEHGIDYLDGTIMAVPQGIGQPGSVLLLSGSAEVHSGRKALIELWGDGDYLGADAGLSALYDLALLGVMWSTIASFLHGAALLGTEDVTAQQFLPKVERWLGAVASFLPGIAAQADSGDYATDVSGLDINVAGLDLLARVSRAQGIGTDVPAALHELYARRLAQGSANDGLASLIDTIRRG

Source

organism	Kutzneria albida DSM 43870
ncbi_taxonomy_id	1449976
host_organism	Escherichia coli

Entity 2 non-polymer

description	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
formula_weight	745.4 kDa
src_method	nat
entity_count	2

Entity 3 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	nat
entity_count	2

Entity 4 non-polymer

description	3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL
formula_weight	370.4 kDa
src_method	nat
entity_count	1

Entity 5 non-polymer

description	SODIUM ION
formula_weight	23.0 kDa
src_method	nat
entity_count	1

Entity 6 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	302

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6. Citations (1)

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length_a	117.395 Å
length_b	117.395 Å
length_c	99.569 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	P 43 21 2
int_tables_number	96
crystal_system	—

resolution	2.499 Å
resolution_low	41.540 Å
r_factor	—
r_work	0.1603
r_free	0.2275

fit	/app/data/saxs_computation/vw/9vw7/9vw7.fit
pddf	/app/data/pr_computation/vw/9vw7/9vw7.pr.out
profile	/app/data/saxs_computation/vw/9vw7/9vw7.dat