Doc and Phd complex from Enterococcus faecalis

entry_id	9vzc
deposition_date	2025-07-22
last_revision	2026-05-27
title	Doc and Phd complex from Enterococcus faecalis
keywords	Doc and Phd complex, TOXIN; TOXIN
method	X-RAY DIFFRACTION

rg_guinier	22.55 Å
rg_electron	21.75 Å
i0	23091000.00
molecular_weight	37184.0 kDa
excluded_volume	46760 ų
envelope_volume	55066 ų
shell_volume	21582 ų
envelope_diameter	78.8 Å
shell_rg	28.07 Å
envelope_rg	21.99 Å
shape_rg	21.75 Å
total_rg	22.55 Å
total_atoms	2614
n_residues	321
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	76.1 Å
rg_real	22.57 Å
rg_real_error	0.44 Å
i0_real	2.3090e+07
i0_real_error	3.0730e+05
rg_reciprocal	22.57 Å
i0_reciprocal	23090000.0000
total_estimate	0.8692
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	24.2 Å
skewness	0.398
kurtosis	-0.321
angular_range	— – 0.3500 Å−1
current_alpha	0.0000
highest_alpha	6397000.0000
n_real_points	67
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.794; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.982; Smooth: 0.930

Unit Cell

length_a	38.035 Å
length_b	77.278 Å
length_c	58.304 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

Symmetry

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

Refinement

resolution	1.800 Å
resolution_low	29.450 Å
r_factor	0.1832
r_work	0.1815
r_free	0.2172

Diffraction

temperature

273.0 K

Files (7)

• pr_distribution /app/data/pr_computation/vz/9vzc/pr_distribution.json
• pr_output /app/data/pr_computation/vz/9vzc/9vzc.pr.out
• pr_plot /app/data/visualization/pr_computation/vz/9vzc/9vzc_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/vz/9vzc/9vzc.dat
• saxs_fit /app/data/saxs_computation/vz/9vzc/9vzc.fit
• saxs_log /app/data/saxs_computation/vz/9vzc/9vzc.log
• saxs_plot /app/data/visualization/saxs_computation/vz/9vzc/9vzc_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/vz/9vzc/9vzc.fit
pddf	/app/data/pr_computation/vz/9vzc/9vzc.pr.out
profile	/app/data/saxs_computation/vz/9vzc/9vzc.dat