9wbj
cryo-EM structure of RIBEYE SAM thick filament
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9wbj |
| deposition_date | 2025-08-14 |
| title | cryo-EM structure of RIBEYE SAM thick filament |
| keywords | RIBEYE, CTBP2, ribbon synapse, filament, PROTEIN BINDING; PROTEIN BINDING |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 83.89 Å |
| rg_electron | 86.56 Å |
| i0 | 928307000.00 |
| molecular_weight | 253590.0 kDa |
| excluded_volume | 317490 ų |
| envelope_volume | 604760 ų |
| shell_volume | 70507 ų |
| envelope_diameter | 301.6 Å |
| shell_rg | 57.35 Å |
| envelope_rg | 85.75 Å |
| shape_rg | 86.57 Å |
| total_rg | 85.89 Å |
| total_atoms | 17816 |
| n_residues | 2346 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 232.8 Å |
| rg_real | 78.87 Å |
| rg_real_error | 1.63 Å |
| i0_real | 8.9930e+08 |
| i0_real_error | 2.0550e+07 |
| rg_reciprocal | 77.16 Å |
| i0_reciprocal | 911100000.0000 |
| total_estimate | 0.7886 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 49.0 Å |
| skewness | 0.467 |
| kurtosis | -0.768 |
| angular_range | — – 0.0950 Å−1 |
| current_alpha | 0.0619 |
| highest_alpha | 30270000.0000 |
| n_real_points | 20 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.619; Stabil: 0.949; Sysdev: 1.000; Positv: 1.000; Valcen: 0.604; Smooth: 0.122 |