9wbk
cryo-EM structure of RIBEYE SAM thin filament
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9wbk |
| deposition_date | 2025-08-14 |
| title | cryo-EM structure of RIBEYE SAM thin filament |
| keywords | RIBEYE, CTBP2, ribbon synapse, filament, PROTEIN BINDING; PROTEIN BINDING |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 83.24 Å |
| rg_electron | 86.39 Å |
| i0 | 631873000.00 |
| molecular_weight | 208840.0 kDa |
| excluded_volume | 261460 ų |
| envelope_volume | 400860 ų |
| shell_volume | 51600 ų |
| envelope_diameter | 302.7 Å |
| shell_rg | 48.51 Å |
| envelope_rg | 88.21 Å |
| shape_rg | 86.39 Å |
| total_rg | 85.53 Å |
| total_atoms | 14672 |
| n_residues | 1932 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 237.3 Å |
| rg_real | 79.62 Å |
| rg_real_error | 1.80 Å |
| i0_real | 6.1730e+08 |
| i0_real_error | 1.3330e+07 |
| rg_reciprocal | 75.41 Å |
| i0_reciprocal | 618500000.0000 |
| total_estimate | 0.6482 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 4 |
| r_peak_primary | 37.5 Å |
| skewness | 0.487 |
| kurtosis | -0.828 |
| angular_range | — – 0.0950 Å−1 |
| current_alpha | 0.0300 |
| highest_alpha | 9483000.0000 |
| n_real_points | 20 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.230; Stabil: 0.930; Sysdev: 1.000; Positv: 1.000; Valcen: 0.183; Smooth: 0.350 |