← Back to search

9wca

Closed state of A8 gpJ 713 central tail fiber

Method: ELECTRON MICROSCOPY D_max: 131.3 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9wca
deposition_date	2025-08-16
title	Closed state of A8 gpJ 713 central tail fiber
keywords	Phage Tail, VIRAL PROTEIN; VIRAL PROTEIN
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	49.04 Å
rg_electron	50.27 Å
i0	366042000.00
molecular_weight	153840.0 kDa
excluded_volume	191460 Å³
envelope_volume	267360 Å³
shell_volume	51159 Å³
envelope_diameter	215.8 Å
shell_rg	44.28 Å
envelope_rg	52.30 Å
shape_rg	50.33 Å
total_rg	49.81 Å
total_atoms	10827
n_residues	1413
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	131.3 Å
rg_real	45.45 Å
rg_real_error	0.53 Å
i0_real	3.5200e+08
i0_real_error	5.7230e+06
rg_reciprocal	49.05 Å
i0_reciprocal	365400000.0000
total_estimate	0.7063
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	49.3 Å
skewness	0.371
kurtosis	-0.593
angular_range	— – 0.1600 Å⁻¹
current_alpha	0.0499
highest_alpha	16650000.0000
n_real_points	33
gnom_version	4.1.3
quality_criteria	AN1: 0.003; Oscil: 0.931; Stabil: 0.975; Sysdev: 0.000; Positv: 1.000; Valcen: 0.950; Smooth: 0.737

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

Entity 1 polymer

description	A8 gpJ 713
formula_weight	47315.7 kDa
src_method	man
entity_count	3

Polymer

type	polypeptide(L)
strand_id	J,Z,F
atom_count	10827

HHHHHHHHAPAAPSRIELTPGYFQITATPHLAVYDPTVQFEFWFSEKQIADIRQVETSTRYLGTALYWIAASINIKPGHDYYFYIRSVNTVGKSAFVEAVGRASDDAEGYLDFFKGKITESHLGKELLEKVELTEDNASRLEEFSKEWKDASDKWNAMWAVKIEQTKDGKHYVAGIGLSMEDTEEGKLSQFLVAANRIAFIDPANGNETPMFVAQGNQIFMNDVFLKRLTAPTITSGGNPPAFSLTPDGKLTAKNADISGSVNANSGTLNNVTINENCQIKGKLSANQIEGDIVKTVSKSFPRTNSYASGTITVRISDDQKFDRQVMIPPVLFRGGKHENFNSNNQQSYWYSTCRLRVTRNGQEIFNQSTTDAQGVFSSVIDMPAGQGTLTLTFTVSSSGANNWTPTTSISDLLVVVMKKSTAGISIS

Source

organism	Escherichia phage Lambda
ncbi_taxonomy_id	2681611
host_organism	Escherichia coli BL21(DE3)

Entity 2 polymer

description	Peptidyl-prolyl cis-trans isomerase A
formula_weight	20453.3 kDa
ec_number	5.2.1.8
src_method	man
entity_count	3

Polymer

type	polypeptide(L)
strand_id	j,z,f

MFKSTLAAMAAVFALSALSPAAMAAKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP

Source

organism	Escherichia coli O157:H7 str. EDL933
ncbi_taxonomy_id	155864
host_organism	Escherichia coli BL21(DE3)

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.49 Å
resolution_method	—
num_particles	861098

fit	/app/data/saxs_computation/wc/9wca/9wca.fit
pddf	/app/data/pr_computation/wc/9wca/9wca.pr.out
profile	/app/data/saxs_computation/wc/9wca/9wca.dat

Closed state of A8 gpJ 713 central tail fiber

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)