SAXSdb — 9wsz

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1. Structure Basics

entry_id	9wsz
deposition_date	2025-09-15
title	CryoEM structure of baseplate iris structure in the contracted AlgoCIS
keywords	Contractile injection system, CryoEM, marine bacterium, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	— Å
rg_electron	103.10 Å
i0	21913800000.00
molecular_weight	1304700.0 kDa
excluded_volume	1646100 Å³
envelope_volume	3672700 Å³
shell_volume	289610 Å³
envelope_diameter	302.6 Å
shell_rg	115.40 Å
envelope_rg	93.55 Å
shape_rg	103.10 Å
total_rg	103.10 Å
total_atoms	92154
n_residues	11406
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	241.5 Å
rg_real	101.60 Å
rg_real_error	0.27 Å
i0_real	2.0930e+10
i0_real_error	3.5670e+08
rg_reciprocal	108.60 Å
i0_reciprocal	22250000000.0000
total_estimate	0.9042
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	1
r_peak_primary	161.0 Å
skewness	-0.246
kurtosis	-0.774
angular_range	— – 0.0750 Å⁻¹
current_alpha	1.3750
highest_alpha	1009000000.0000
n_real_points	16
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.999; Stabil: 0.946; Sysdev: 1.000; Positv: 1.000; Valcen: 0.926; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	Baseplate protein Alg12
formula_weight	106550.5 kDa
src_method	nat
entity_count	6

Polymer

type	polypeptide(L)
strand_id	A,B,C,D,E,F
atom_count	92154

MSSKDDLDFHFLREEGIRYIKELGSNFWTDYNTHDPGITMLEVLCYAISDLGNRINIPIEDLIANEEGGVKGQFYKVQEILPSAPTSELDLRKLFIDIEGIKNCWIKRERVTVFADLKNQKLSYEKTIWEDLKENQKAQFDLKGLYRILVETEDADKVLSESLEKAVFTKFHANRNLCEDLIKVEKVATEPISVCANVEVAPEADEELIHAQILIAIEDYLAPSPRHYSLKQMVDKGYTMDEIFEGPFLENGFIDTVELKASELRKEVRLSDIINIIMSIDGVKIVKEITLGNCDENDGIENNQWVICIPENKKPKLCKKTTINYFKGILPINLNPVRVDNHKSKILASRLENDLKAKDDLEPAIPQGTFADWGEYSSIQHEFPETYGISDIGLPPKLGVKRAVLARQLKGYLLFFDQILASYFEHLSKIKSLLSLDQGPSFTYFTQAIKDIKDVEELFKDPTLLENDEELTKSLIGKLDDTIERRNQLMDHLIARFAENFSSYAFLMKFLYGESTDEIVLQDKQSFLREYKEISRERGEGFNFYEQSNDNLWDTLNVSGAQKRISKLVGVKDYSRRNLSDTAVEIYRYEHVDGNWVYRWRIRDENGKVLLSATTSYPTYNSAGNEMYFAILKILETPLSDLEKLLEVNFRNENEAGSFHFHKAATSNKFSFDIINPVIDSESSSDFIVAKQYTYYPDRTQAVLGAISLLNFIKYTFTFTEEGIYLVEHILLRPSPLDPEYLAMQTDAGKEYIEGNFLPFCSDDYENCKMIDPYSFRVSIVLPGFTYRFANKDFRDYLENLIREELPAHIVAKICWIGYRKGEEPELFQEDVENPETPIFKENQLEIFEKAYKNYLFELTDIHKRKGFIASMNKYNQVLNEMTSSLTGLHTIYPTGRLYDCEDEEEELDGKLILGKTNLGTL

Entity 2 polymer

description	Baseplate protein J-like domain-containing protein
formula_weight	119379.3 kDa
src_method	nat
entity_count	6

Polymer

type	polypeptide(L)
strand_id	G,H,I,J,K,L

MSENCNHIVTTLKRDGTGRRDLLDPKLAPESVQLQDFELSDWLIFALNFARKIHFFPSDLANEPLGDWRNFFSTIVSDKTLISDIENLDDFEKLRGNIEEFLAAYDQSGKLTPHLTLFVSFLKLLETSKKRFNQLTKRHLDFYYQEILHLEKQALSPDHVFLIFELAKNVSQEKLDEGTEVDGGKDDTGKKNTYLTSFETVLNKTKVGQLKSLYNEISVEKEEIKELNTPISTGTFVMAPMANSFDGLGEDFPKGSEKWWPFGYTKICNASTVLPALPKARLGCSISSKLLKLSEGTRDIILEFTFNKPILPNGEDYTALNKAMSIELTGEKGWIAGLPMTLKSDSGINSGSKKMKLSLTLDSEQPAVVPYQTELHEGSYEVDEPLLRVLFKTNEKEGYNLYRLFNENVLTDLKITVEVSDITSVQLENDLGVLNPQKPFFPFGPRPIKGSSFIVKYPEAMEKPVTAISYQMDYLNLPENLVNHYSAYTIGDDEPLVSDMDYFSVKSFPKSSNDSDQLFSEKSGGGYESDFEFQIENGVWESGLKKELKISLERSFLHEKYAHYFTLVAISKDTDPTIELLPNEPYAPLAENLVLGYTAISSIDFSSSSSENQVSLIHEMPFGFQQVFTPGDTDNSLYLVPDYCHGGELYIGLENGKNLQQVTLLLQFLEGSENPDITDIFTGNQKIKWQYLSQNQWQDFQSGEIIQNQTPRFLKSGIFQFSIPKQANLDNTVLPPGYHWIKASMVKPFDVVSQLINIHAQAVEAVFEDQGSSGNHLEKGLPAETISKLQERLSWIKSIQQPYPSTKGKAQESDEDYYRRVSERLRHKKRAITLWDYEHLILQKFPKVYKVKCLNHTCSSSFQSPGNATLILVPDTVQQSVFDIYQPRVSQGTLNDVAAFVNELNSFHVQAKVINPNYEEVKVDVKVKFREGLDVSFYLTKVKEDIKKFLSPWAYDQESSVEFGVTLHRSQMIHYLEQLTYVDYITDLRLLKRQAGSSPCNPIFIETTEKEYIQPSNPKSILVSAKEHLVTPITQNCSSISLNNEEECQH

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6. Citations (1)

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resolution	3.70 Å
resolution_method	—
num_particles	30251

fit	/app/data/saxs_computation/ws/9wsz/9wsz.fit
pddf	/app/data/pr_computation/ws/9wsz/9wsz.pr.out
profile	/app/data/saxs_computation/ws/9wsz/9wsz.dat

CryoEM structure of baseplate iris structure in the contracted AlgoCIS

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)