SAXSdb — 9wt0

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1. Structure Basics

entry_id	9wt0
deposition_date	2025-09-15
title	CryoEM structure of one tail-fiber connected to the baseplate wedge in the contracted AlgoCIS
keywords	Contractile injection system, CryoEM, marine bacterium, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	57.71 Å
rg_electron	58.96 Å
i0	976120000.00
molecular_weight	265630.0 kDa
excluded_volume	334640 Å³
envelope_volume	530680 Å³
shell_volume	80909 Å³
envelope_diameter	212.8 Å
shell_rg	52.74 Å
envelope_rg	59.98 Å
shape_rg	58.94 Å
total_rg	58.82 Å
total_atoms	18756
n_residues	2329
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	191.7 Å
rg_real	58.42 Å
rg_real_error	1.82 Å
i0_real	9.7610e+08
i0_real_error	1.9020e+07
rg_reciprocal	57.09 Å
i0_reciprocal	974100000.0000
total_estimate	0.7825
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	49.7 Å
skewness	0.641
kurtosis	-0.205
angular_range	— – 0.1350 Å⁻¹
current_alpha	0.0000
highest_alpha	116600000.0000
n_real_points	28
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.730; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.864; Smooth: 0.115

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	PKD domain-containing protein
formula_weight	162412.4 kDa
src_method	nat
entity_count	3

Polymer

type	polypeptide(L)
strand_id	a,b,c
atom_count	18756

MANKLSTITTQYHTYKVDQVLTHTQLNESIAFFEDQDRLTRVFLNGVGIVCGFKISRPTSTIIRVSQGIGVTTDGDLLKLLREAAEEDSPGLRIVEEFVDYTHFRDFNDENSHYEKFNLGESKINLWELVPKEKANETDQPISQIGGLVDKIAVLYLETYAREADLCSGINCDNQGVEQVAHLRVLLTDVAGAKHLLADDGVYQKLDIKTLYGKLKKVKLQKVLLSKANTKDLQKLEDSYYSAIMGADIGKLSDGLNSISEFLGVNVNVEQALKIFQQKPSSTYVNFFQYQYDWLRDVISTYHEIIETLFKLNATCLPDINAFPKHLMLGRVIPSVGTEQYRHGFYSSPITGDTSVTNKLHLLLERLRLILSTFHTPVTDINITPSVFSGDLGDKAIPFYYKANSVLLNNWSFEKSRMGFNSDITSYVRQKDEETGITIEPLEIDTDENDFYRIEGHQGQGFEKAMIEIQDLVYKYNLDFDVKAVSINEALDSIRMEDYKCHFEDLMVLLDAWNDEISCVTGKITSFFTSLKIKELLEENAAAESESEVASIKETSKVYQPTSKSDTMTLEQLAILIKNQKITLAEAKRLYPYLFESTQDYKTENSKSIRESVIKNVKEEEESLGFVFQPVFTAEMPVYYGYNEIKVEAEKEVANYLKDFQIQEDEKVALVDKPIEIIAASYDISNYIPERLFELDSGYIVEYETSIESLCEKLDEFSKRVEKLSINDRLKSSLQSRALYFTSVCCAANKLKILQAEIEARKKHILEQLQFSNFHEHHPGLDHRAGVSKGGTFVMVYYTRPTRVSKRGISIAGFKEISVAENSYGDFSKTIDLNEISKELNLFTDPKNLEKDLEIFRKQLSGDKSSLHGLDVLKSRNLKSNLKDKTVIADFMLPYRCCSDCNPINFIVPRPVIFLNLNTETYCLGLEQEEISFEVIPVDGEVTVVDNVAGVIISGRSISIDPGAFPKEMLGEAISFLVNDEPTDAKLTVLQAPTFVLNLPDGPVSDPSIEFSASPSFDNAGYLWEFGDGTSSTEVAPKKTFSLPVNAENKISVSLTITPENGACPNRVTGEIVFEEQEEEVDLTLTPNEFCRDQSTEPVAFGVVPDDGNVTGPGVQPGENGNGFVFNPILIEDIDLEKDLRFRVNGKETDLIVRVYQTPVIAFTTSAVNNPTNNSKTVTLTITNPPSSVREYIWSINDKDRAGTSESSYTETFPASVTSLKVSVLAILSNLCEEASSNVSIIILQSGSVDTCTDIGEKWLSDQNLRISRFMESPDFEKIDDWGQQTYTQAINGIKNDNGADIIGFAEIVKNSSLYLAGGDEQNKQLMQIFSNHYPPLISYIMEMNSNNGPGVLPMKDLYKTFVQLFYTLIRCQDKEVLIERGAEFQFDAIVSRITSDFKELQGSSIKWDVNDEIPGIYEELLEVFDSVPYLKNGLQNQLTLMV

Entity 2 polymer

description	The baseplate protein Alg12
formula_weight	106550.5 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A

MSSKDDLDFHFLREEGIRYIKELGSNFWTDYNTHDPGITMLEVLCYAISDLGNRINIPIEDLIANEEGGVKGQFYKVQEILPSAPTSELDLRKLFIDIEGIKNCWIKRERVTVFADLKNQKLSYEKTIWEDLKENQKAQFDLKGLYRILVETEDADKVLSESLEKAVFTKFHANRNLCEDLIKVEKVATEPISVCANVEVAPEADEELIHAQILIAIEDYLAPSPRHYSLKQMVDKGYTMDEIFEGPFLENGFIDTVELKASELRKEVRLSDIINIIMSIDGVKIVKEITLGNCDENDGIENNQWVICIPENKKPKLCKKTTINYFKGILPINLNPVRVDNHKSKILASRLENDLKAKDDLEPAIPQGTFADWGEYSSIQHEFPETYGISDIGLPPKLGVKRAVLARQLKGYLLFFDQILASYFEHLSKIKSLLSLDQGPSFTYFTQAIKDIKDVEELFKDPTLLENDEELTKSLIGKLDDTIERRNQLMDHLIARFAENFSSYAFLMKFLYGESTDEIVLQDKQSFLREYKEISRERGEGFNFYEQSNDNLWDTLNVSGAQKRISKLVGVKDYSRRNLSDTAVEIYRYEHVDGNWVYRWRIRDENGKVLLSATTSYPTYNSAGNEMYFAILKILETPLSDLEKLLEVNFRNENEAGSFHFHKAATSNKFSFDIINPVIDSESSSDFIVAKQYTYYPDRTQAVLGAISLLNFIKYTFTFTEEGIYLVEHILLRPSPLDPEYLAMQTDAGKEYIEGNFLPFCSDDYENCKMIDPYSFRVSIVLPGFTYRFANKDFRDYLENLIREELPAHIVAKICWIGYRKGEEPELFQEDVENPETPIFKENQLEIFEKAYKNYLFELTDIHKRKGFIASMNKYNQVLNEMTSSLTGLHTIYPTGRLYDCEDEEEELDGKLILGKTNLGTL

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6. Citations (1)

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resolution	3.90 Å
resolution_method	—
num_particles	72307

fit	/app/data/saxs_computation/wt/9wt0/9wt0.fit
pddf	/app/data/pr_computation/wt/9wt0/9wt0.pr.out
profile	/app/data/saxs_computation/wt/9wt0/9wt0.dat

CryoEM structure of one tail-fiber connected to the baseplate wedge in the contracted AlgoCIS

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)