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9yfw

VPS13A central bridge domain

Method: ELECTRON MICROSCOPY D_max: 103.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

P(r) distribution for 9yfw

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1. Structure Basics

entry_id	9yfw
deposition_date	2025-09-27
title	VPS13A central bridge domain
keywords	VPS13A, BLTP, RBG motif, LIPID TRANSPORT; LIPID TRANSPORT
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	31.28 Å
rg_electron	30.65 Å
i0	60110700.00
molecular_weight	64061.0 kDa
excluded_volume	81691 Å³
envelope_volume	111740 Å³
shell_volume	32042 Å³
envelope_diameter	107.3 Å
shell_rg	36.13 Å
envelope_rg	30.10 Å
shape_rg	30.64 Å
total_rg	31.27 Å
total_atoms	4500
n_residues	564
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	103.9 Å
rg_real	31.31 Å
rg_real_error	0.89 Å
i0_real	6.0110e+07
i0_real_error	9.0340e+05
rg_reciprocal	31.30 Å
i0_reciprocal	60110000.0000
total_estimate	0.8757
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	36.7 Å
skewness	0.356
kurtosis	-0.193
angular_range	— – 0.2550 Å⁻¹
current_alpha	0.0000
highest_alpha	2526000.0000
n_real_points	52
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.840; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.993; Smooth: 0.868

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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7. Files & Curves (10)