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9yi2

Human EEPD1 EEP domain dimer

Method: ELECTRON MICROSCOPY Dmax: 104.6 Å Quality: GOOD

SAXS Profile

SAXS profile for 9yi2

P(r) Distribution

P(r) distribution for 9yi2
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1. Structure Basics

entry_id9yi2
deposition_date2025-10-01
titleHuman EEPD1 EEP domain dimer
keywords;Endonuclease/Exonuclease/Phosphatase Fold, dimerization, helix-hairpin-helix domains, replication stress response, DNA BINDING PROTEIN ;; DNA BINDING PROTEIN
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier30.87 Å
rg_electron30.68 Å
i059461800.00
molecular_weight60749.0 kDa
excluded_volume76091 ų
envelope_volume99093 ų
shell_volume27933 ų
envelope_diameter111.2 Å
shell_rg36.57 Å
envelope_rg30.22 Å
shape_rg30.67 Å
total_rg31.27 Å
total_atoms4290
n_residues546
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax104.6 Å
rg_real31.08 Å
rg_real_error0.96 Å
i0_real5.9460e+07
i0_real_error9.7280e+05
rg_reciprocal31.00 Å
i0_reciprocal59460000.0000
total_estimate0.8208
solution_quality GOOD a GOOD solution
n_peaks2
r_peak_primary26.7 Å
skewness0.410
kurtosis-0.627
angular_range— – 0.2550 Å−1
current_alpha0.0000
highest_alpha18460000.0000
n_real_points52
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.683; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.650; Smooth: 0.967
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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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7. Files & Curves (10)