9yi3
Crystal structure of PprA S-F filament from Deinococcus radiodurans
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9yi3 |
| deposition_date | 2025-10-01 |
| last_revision | 2025-10-15 |
| title | Crystal structure of PprA S-F filament from Deinococcus radiodurans |
| keywords | ;PprA, Deinococcus, Deinococcus radiodurans, D. radiodurans, DNA repair, DNA binding protein, Genome reassembly, self-assembly, protein filament ;; DNA BINDING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 34.76 Å |
| rg_electron | 34.81 Å |
| i0 | 61898600.00 |
| molecular_weight | 59758.0 kDa |
| excluded_volume | 73535 ų |
| envelope_volume | 101160 ų |
| shell_volume | 26372 ų |
| envelope_diameter | 133.0 Å |
| shell_rg | 37.57 Å |
| envelope_rg | 35.22 Å |
| shape_rg | 34.70 Å |
| total_rg | 35.34 Å |
| total_atoms | 8300 |
| n_residues | 544 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 126.5 Å |
| rg_real | 35.27 Å |
| rg_real_error | 1.61 Å |
| i0_real | 6.1900e+07 |
| i0_real_error | 1.2080e+06 |
| rg_reciprocal | 34.95 Å |
| i0_reciprocal | 61880000.0000 |
| total_estimate | 0.7509 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 27.5 Å |
| skewness | 0.637 |
| kurtosis | -0.169 |
| angular_range | — – 0.2300 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 7846000.0000 |
| n_real_points | 47 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.561; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.447; Smooth: 0.629 |