9yl4
Crystal structure of PprA S-F filament from Deinococcus radiodurans
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9yl4 |
| deposition_date | 2025-10-08 |
| last_revision | 2025-10-22 |
| title | Crystal structure of PprA S-F filament from Deinococcus radiodurans |
| keywords | ;PprA, Deinococcus, Deinococcus radiodurans, D. radiodurans, DNA repair, DNA binding protein, Genome reassembly, self-assembly, protein filament ;; DNA BINDING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 70.73 Å |
| rg_electron | 70.99 Å |
| i0 | 1988810000.00 |
| molecular_weight | 357660.0 kDa |
| excluded_volume | 440160 ų |
| envelope_volume | 797790 ų |
| shell_volume | 99211 ų |
| envelope_diameter | 263.0 Å |
| shell_rg | 64.09 Å |
| envelope_rg | 69.29 Å |
| shape_rg | 70.94 Å |
| total_rg | 71.00 Å |
| total_atoms | 25066 |
| n_residues | 3257 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 217.3 Å |
| rg_real | 70.40 Å |
| rg_real_error | 1.58 Å |
| i0_real | 1.9820e+09 |
| i0_real_error | 4.3010e+07 |
| rg_reciprocal | 69.59 Å |
| i0_reciprocal | 1983000000.0000 |
| total_estimate | 0.8739 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 69.1 Å |
| skewness | 0.394 |
| kurtosis | -0.386 |
| angular_range | — – 0.1100 Å−1 |
| current_alpha | 0.0190 |
| highest_alpha | 85890000.0000 |
| n_real_points | 23 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.966; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.457 |