9yl5
;Crystal Structure of 6,7-dimethyl-8-ribityllumazine synthase from Bordetella pertussis in complex with 5-amino-6-(D-ribitylamino)uracil ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9yl5 |
| deposition_date | 2025-10-08 |
| last_revision | 2025-10-22 |
| title | ;Crystal Structure of 6,7-dimethyl-8-ribityllumazine synthase from Bordetella pertussis in complex with 5-amino-6-(D-ribitylamino)uracil ; |
| keywords | SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, TRANSFERASE; TRANSFERASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 27.20 Å |
| rg_electron | 26.06 Å |
| i0 | 111583000.00 |
| molecular_weight | 80548.0 kDa |
| excluded_volume | 99755 ų |
| envelope_volume | 118150 ų |
| shell_volume | 36350 ų |
| envelope_diameter | 83.9 Å |
| shell_rg | 34.56 Å |
| envelope_rg | 26.11 Å |
| shape_rg | 26.06 Å |
| total_rg | 26.85 Å |
| total_atoms | 5621 |
| n_residues | 765 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 81.0 Å |
| rg_real | 27.04 Å |
| rg_real_error | 0.46 Å |
| i0_real | 1.1160e+08 |
| i0_real_error | 1.6970e+06 |
| rg_reciprocal | 27.09 Å |
| i0_reciprocal | 111600000.0000 |
| total_estimate | 0.9093 |
| solution_quality | EXCELLENT a EXCELLENT solution |
| n_peaks | 2 |
| r_peak_primary | 33.5 Å |
| skewness | 0.159 |
| kurtosis | -0.524 |
| angular_range | — – 0.2900 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 30550000.0000 |
| n_real_points | 59 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.964; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.987; Smooth: 0.937 |