9znj
;Crystal Structure of 6,7-dimethyl-8-ribityllumazine synthase from Bordetella pertussis in complex with 6,7-dimethyl-8-(1'-D-ribityl) lumazine ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9znj |
| deposition_date | 2025-12-12 |
| last_revision | 2025-12-24 |
| title | ;Crystal Structure of 6,7-dimethyl-8-ribityllumazine synthase from Bordetella pertussis in complex with 6,7-dimethyl-8-(1'-D-ribityl) lumazine ; |
| keywords | SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, RIBOFLAVIN SYNTHASE, TRANSFERASE; TRANSFERASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 27.04 Å |
| rg_electron | 25.98 Å |
| i0 | 111241000.00 |
| molecular_weight | 80144.0 kDa |
| excluded_volume | 99098 ų |
| envelope_volume | 117160 ų |
| shell_volume | 36156 ų |
| envelope_diameter | 81.7 Å |
| shell_rg | 34.53 Å |
| envelope_rg | 25.96 Å |
| shape_rg | 26.01 Å |
| total_rg | 26.72 Å |
| total_atoms | 5591 |
| n_residues | 763 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 79.7 Å |
| rg_real | 26.87 Å |
| rg_real_error | 0.33 Å |
| i0_real | 1.1120e+08 |
| i0_real_error | 1.4210e+06 |
| rg_reciprocal | 26.93 Å |
| i0_reciprocal | 111200000.0000 |
| total_estimate | 0.9103 |
| solution_quality | EXCELLENT a EXCELLENT solution |
| n_peaks | 2 |
| r_peak_primary | 33.8 Å |
| skewness | 0.155 |
| kurtosis | -0.526 |
| angular_range | — – 0.2950 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 28630000.0000 |
| n_real_points | 60 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.970; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.989; Smooth: 0.931 |