9ysq

Structure of a human NUAK1-MARK3 kinase domain chimera in complex with inhibitor

Method: X-RAY DIFFRACTION Dmax: 88.4 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

MAP/microtubule affinity-regulating kinase 3

Homo sapiens

UniProt P27448

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 48–370 Mutation:I62L, L72R, V116I, G137K, F141Y, A146E A1CZY 3-({5-chloro-2-[2-(difluoromethoxy)-4-(4-methylpiperazin-1-yl)anilino]pyrimidin-4-yl}amino)thiophene-2-carboxamide × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.1M HEPES pH 7.0, 0.2M magnesium formate, 17% PEG3350 Resolution 2.40 Å R-free 0.248
2 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain B; UniProt 48–370 Mutation:I62L, L72R, V116I, G137K, F141Y, A146E A1CZY 3-({5-chloro-2-[2-(difluoromethoxy)-4-(4-methylpiperazin-1-yl)anilino]pyrimidin-4-yl}amino)thiophene-2-carboxamide × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.1M HEPES pH 7.0, 0.2M magnesium formate, 17% PEG3350 Resolution 2.40 Å R-free 0.248

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

13 other PDB entries and 16 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MARK3_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 6–328; UniProt 48–370 Author chain B; PDBConstruct 6–328; UniProt 48–370

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9ysq

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9ysq
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9ysq
Deposition date deposition_date2025-10-19
最后修订 last_revision2026-04-08
Structure title titleStructure of a human NUAK1-MARK3 kinase domain chimera in complex with inhibitor
Keywords keywordsHippo Pathway, SIGNALING PROTEIN; SIGNALING PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier29.22
Radius of gyration Rg (electron density) rg_electron28.42
Forward intensity I(0) i0151583000.00
Molecular weight molecular_weight65510.0 kDa
Excluded volume excluded_volume63590 ų
Envelope volume envelope_volume113880 ų
Hydration-shell volume shell_volume33301 ų
Envelope diameter envelope_diameter92.4
Shell Rg shell_rg35.80
Envelope Rg envelope_rg27.99
Shape Rg shape_rg28.39
Total Rg total_rg29.02
Total atoms total_atoms4969
Residues n_residues616
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax88.4
Rg (real space) rg_real29.13
Rg uncertainty (real space) rg_real_error0.75
I(0) (real space) i0_real1.5160e+08
I(0) uncertainty (real space) i0_real_error2.5830e+06
Rg (reciprocal space) rg_reciprocal29.17
I(0) (reciprocal space) i0_reciprocal151600000.0000
Solution quality estimate total_estimate0.9109
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary40.9
Skewness Skewness skewness0.171
Kurtosis Kurtosis kurtosis-0.577
Angular range angular_range— – 0.2700 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha18730000.0000
Real-space data points n_real_points55
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.972; Stabil: 0.997; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.929

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (1)

9. Files and Curves (10)