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9z9c

Crystal structure of a glyceraldehyde-3-phosphate dehydrogenase from Neisseria gonorrhoeae in complex with NAD (P1 form)

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Glyceraldehyde-3-phosphate dehydrogenase

Neisseria gonorrhoeae NCCP11945

UniProt B4RPP8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 4 NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 4 water × 4 Consistent with protein count
2 Protein homooligomer Homooligomer Protein 4 NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 4 TRIETHYLENE GLYCOL × 1 water × 4 Consistent with protein count
3 Protein homooligomer Homooligomer Protein 4 NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 4 water × 4 Consistent with protein count
4 Protein homooligomer Homooligomer Protein 4 NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 4 water × 4 Consistent with protein count
5 Protein homooligomer Homooligomer Protein 4 NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 4 water × 4 Consistent with protein count
6 Protein homooligomer Homooligomer Protein 4 NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 4 water × 4 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer
9y4u

1 assemblies

Homotetramer
5vmt 5vmt 9z9c 9z9c 9z9c 9z9c 9z9c 9z9c 9zag 9zag 9zao 9zao

15 assemblies; showing the first 12

Other homooligomers

None

Heteromeric or nucleic-acid complex

None

View Construct and Data Evidence
UniProt name B4RPP8_NEIG2
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 9–342； UniProt 24–357 Author chain B； PDBConstruct 9–342； UniProt 24–357 Author chain C； PDBConstruct 9–342； UniProt 24–357 Author chain D； PDBConstruct 9–342； UniProt 24–357 Author chain E； PDBConstruct 9–342； UniProt 24–357 Author chain F； PDBConstruct 9–342； UniProt 24–357 Author chain G； PDBConstruct 9–342； UniProt 24–357 Author chain H； PDBConstruct 9–342； UniProt 24–357 Author chain I； PDBConstruct 9–342； UniProt 24–357 Author chain J； PDBConstruct 9–342； UniProt 24–357 Author chain K； PDBConstruct 9–342； UniProt 24–357 Author chain L； PDBConstruct 9–342； UniProt 24–357 Author chain M； PDBConstruct 9–342； UniProt 24–357 Author chain N； PDBConstruct 9–342； UniProt 24–357 Author chain O； PDBConstruct 9–342； UniProt 24–357 Author chain P； PDBConstruct 9–342； UniProt 24–357 Author chain Q； PDBConstruct 9–342； UniProt 24–357 Author chain R； PDBConstruct 9–342； UniProt 24–357 Author chain S； PDBConstruct 9–342； UniProt 24–357 Author chain T； PDBConstruct 9–342； UniProt 24–357 Author chain U； PDBConstruct 9–342； UniProt 24–357 Author chain V； PDBConstruct 9–342； UniProt 24–357 Author chain W； PDBConstruct 9–342； UniProt 24–357 Author chain X； PDBConstruct 9–342； UniProt 24–357

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9z9c
Deposition date deposition_date2025-11-18
Last revision last_revision2025-11-26
Structure title titleCrystal structure of a glyceraldehyde-3-phosphate dehydrogenase from Neisseria gonorrhoeae in complex with NAD (P1 form)
Keywords keywordsSSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, OXIDOREDUCTASE; OXIDOREDUCTASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9z9c__assembly_4__model_1

Assembly 4 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9z9c__assembly_4__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9z9c__assembly_4__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）31.96 Å
Rg (electron density)31.26 Å
Total Rg31.92 Å
Atom count9902
Residues1313
Excluded volume175500 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9z9c__assembly_1__model_1 tetrameric （4） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 9z9c__assembly_2__model_1 tetrameric （4） Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 9z9c__assembly_3__model_1 tetrameric （4） Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 9z9c__assembly_4__model_1 tetrameric （4） Success 4.1.3-1-20251215 (887e7ef) View Download
5 1 9z9c__assembly_5__model_1 tetrameric （4） Success 4.1.3-1-20251215 (887e7ef) View Download
6 1 9z9c__assembly_6__model_1 tetrameric （4） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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7. Citations (1)