Crystal structure of Formyl-coenzyme A transferase from Brucella melitensis in complex with succinate

Method: X-RAY DIFFRACTION D_max: 182.2 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9zav
deposition_date	2025-11-19
last_revision	2025-12-03
title	Crystal structure of Formyl-coenzyme A transferase from Brucella melitensis in complex with succinate
keywords	SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, TRANSFERASE, Formyl-coenzyme A transferase; TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	57.75 Å
rg_electron	58.36 Å
i0	661050000.00
molecular_weight	214660.0 kDa
excluded_volume	268840 Å³
envelope_volume	407500 Å³
shell_volume	61321 Å³
envelope_diameter	198.6 Å
shell_rg	55.06 Å
envelope_rg	57.70 Å
shape_rg	58.36 Å
total_rg	58.27 Å
total_atoms	15092
n_residues	2006
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	182.2 Å
rg_real	58.33 Å
rg_real_error	2.21 Å
i0_real	6.6100e+08
i0_real_error	1.4200e+07
rg_reciprocal	57.22 Å
i0_reciprocal	659900000.0000
total_estimate	0.7352
solution_quality	REASONABLE a REASONABLE solution
n_peaks	3
r_peak_primary	33.7 Å
skewness	0.402
kurtosis	-0.707
angular_range	— – 0.1350 Å⁻¹
current_alpha	0.0000
highest_alpha	43110000.0000
n_real_points	28
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.658; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.578; Smooth: 0.002

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	189.590 Å
length_b	189.590 Å
length_c	199.316 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	40

space_group	P 43 21 2
int_tables_number	96
crystal_system	—

resolution	2.880 Å
resolution_low	48.190 Å
r_factor	0.1934
r_work	0.1917
r_free	0.2252

description	Formyl-coenzyme a transferase
formula_weight	44101.3 kDa
ec_number	2.8.3.-
src_method	man
entity_count	5

type	polypeptide(L)
strand_id	A,B,C,D,E
atom_count	15092

Crystal structure of Formyl-coenzyme A transferase from Brucella melitensis in complex with succinate

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Brucella melitensis 16M1W
ncbi_taxonomy_id	1143190
host_organism	Escherichia coli BL21(DE3)

description	SUCCINIC ACID
formula_weight	118.1 kDa
src_method	syn
entity_count	3

fit	/app/data/saxs_computation/za/9zav/9zav.fit
pddf	/app/data/pr_computation/za/9zav/9zav.pr.out
profile	/app/data/saxs_computation/za/9zav/9zav.dat