9zmz
Crystal structure of the human Commd4 HN domain in a domain swapped conformation
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9zmz |
| deposition_date | 2025-12-11 |
| last_revision | 2026-01-21 |
| title | Crystal structure of the human Commd4 HN domain in a domain swapped conformation |
| keywords | COMMD, endosome, Commander, PROTEIN TRANSPORT; PROTEIN TRANSPORT |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 17.59 Å |
| rg_electron | 16.41 Å |
| i0 | 2274240.00 |
| molecular_weight | 10723.0 kDa |
| excluded_volume | 13613 ų |
| envelope_volume | 18574 ų |
| shell_volume | 10380 ų |
| envelope_diameter | 52.8 Å |
| shell_rg | 20.71 Å |
| envelope_rg | 15.98 Å |
| shape_rg | 16.37 Å |
| total_rg | 17.49 Å |
| total_atoms | 1533 |
| n_residues | 99 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 54.0 Å |
| rg_real | 17.50 Å |
| rg_real_error | 0.30 Å |
| i0_real | 2.2740e+06 |
| i0_real_error | 2.5700e+04 |
| rg_reciprocal | 17.51 Å |
| i0_reciprocal | 2274000.0000 |
| total_estimate | 0.9031 |
| solution_quality | EXCELLENT a EXCELLENT solution |
| n_peaks | 3 |
| r_peak_primary | 19.4 Å |
| skewness | -0.028 |
| kurtosis | -0.624 |
| angular_range | — – 0.4500 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 105300.0000 |
| n_real_points | 76 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.921; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.975 |