当前蛋白身份：D0VWR2
重新检索
差异标签只比较当前检索结果；所有PDB和assembly原始记录仍分别保留。
相关结构差异明细
一行代表一个 PDB 条目中的一个 biological assembly；同一蛋白的多个单体会分别列出。
| PDB 条目 | Assembly / 聚集状态 | 构建体 | 突变与修饰 | 配体、离子与非聚合物 | 实验方法 | 实验环境 | 结构质量 |
|---|---|---|---|---|---|---|---|
| 3WU2 Crystal structure analysis of Photosystem II complex 提交 2014-04-21 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 38 PDB 声明：38-meric（38） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | OEX CA-MN4-O5 CLUSTER × 2 FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 20 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 10 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 43 LMT DODECYL-BETA-D-MALTOSIDE × 16 GOL GLYCEROL × 36 CA CALCIUM ION × 7 HTG heptyl 1-thio-beta-D-glucopyranoside × 19 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 10 BCT BICARBONATE ION × 2 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HEM PROTOPORPHYRIN IX CONTAINING FE × 4 RRX (3R)-beta,beta-caroten-3-ol × 2 MG MAGNESIUM ION × 2 SO4 SULFATE ION × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
MICRO-BATCH METHOD UNDER OIL；pH 6.1；285 K；5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM MES buffer, pH 6.1, MICRO-BATCH METHOD UNDER OIL, temperature 285K
|
分辨率 1.90 Å R-free 0.194 |
| 4UB6 Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser 提交 2014-08-12 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 20 PDB 声明：eicosameric（20） 与蛋白数一致 |
链 O
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 1 CL CHLORIDE ION × 3 BCT BICARBONATE ION × 1 CLA CHLOROPHYLL A × 35 PHO PHEOPHYTIN A × 2 BCR BETA-CAROTENE × 11 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 5 GOL GLYCEROL × 20 LMT DODECYL-BETA-D-MALTOSIDE × 6 OEX CA-MN4-O5 CLUSTER × 1 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 2 UNL UNKNOWN LIGAND × 9 CA CALCIUM ION × 3 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 HTG heptyl 1-thio-beta-D-glucopyranoside × 10 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 5 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MG MAGNESIUM ION × 1 HEC HEME C × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；290 K；PEG, magnesium sulfate
|
分辨率 1.95 Å R-free 0.238 |
| 4UB6 Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser 提交 2014-08-12 | Assembly 2 蛋白异源复合物 异源复合物；蛋白 × 19 PDB 声明：nonadecameric（19） 与蛋白数一致 |
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 1 CL CHLORIDE ION × 3 BCT BICARBONATE ION × 1 CLA CHLOROPHYLL A × 35 PHO PHEOPHYTIN A × 2 BCR BETA-CAROTENE × 11 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 3 GOL GLYCEROL × 17 LMT DODECYL-BETA-D-MALTOSIDE × 8 OEX CA-MN4-O5 CLUSTER × 1 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 2 UNL UNKNOWN LIGAND × 9 CA CALCIUM ION × 4 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 HTG heptyl 1-thio-beta-D-glucopyranoside × 7 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 5 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MG MAGNESIUM ION × 1 HEC HEME C × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；290 K；PEG, magnesium sulfate
|
分辨率 1.95 Å R-free 0.238 |
| 4UB8 Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser 提交 2014-08-12 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 20 PDB 声明：eicosameric（20） 与蛋白数一致 |
链 O
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 1 CL CHLORIDE ION × 3 BCT BICARBONATE ION × 1 CLA CHLOROPHYLL A × 35 PHO PHEOPHYTIN A × 2 BCR BETA-CAROTENE × 11 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 3 GOL GLYCEROL × 21 UNL UNKNOWN LIGAND × 9 LMT DODECYL-BETA-D-MALTOSIDE × 7 OEX CA-MN4-O5 CLUSTER × 1 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 2 CA CALCIUM ION × 3 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 HTG heptyl 1-thio-beta-D-glucopyranoside × 10 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 5 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MG MAGNESIUM ION × 1 HEC HEME C × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；290 K；PEG, magnesium sulfate
|
分辨率 1.95 Å R-free 0.225 |
| 4UB8 Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser 提交 2014-08-12 | Assembly 2 蛋白异源复合物 异源复合物；蛋白 × 19 PDB 声明：nonadecameric（19） 与蛋白数一致 |
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 1 CL CHLORIDE ION × 3 BCT BICARBONATE ION × 1 CLA CHLOROPHYLL A × 35 PHO PHEOPHYTIN A × 2 BCR BETA-CAROTENE × 11 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 5 GOL GLYCEROL × 16 UNL UNKNOWN LIGAND × 10 LMT DODECYL-BETA-D-MALTOSIDE × 7 OEX CA-MN4-O5 CLUSTER × 1 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 2 CA CALCIUM ION × 4 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 HTG heptyl 1-thio-beta-D-glucopyranoside × 7 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 5 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MG MAGNESIUM ION × 1 HEC HEME C × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；290 K；PEG, magnesium sulfate
|
分辨率 1.95 Å R-free 0.225 |
| 5B5E Crystal structure analysis of Photosystem II complex 提交 2016-05-02 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 38 PDB 声明：38-meric（38） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | OEX CA-MN4-O5 CLUSTER × 2 FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 20 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 14 UNL UNKNOWN LIGAND × 53 LMT DODECYL-BETA-D-MALTOSIDE × 16 DMS DIMETHYL SULFOXIDE × 112 BCT BICARBONATE ION × 2 CA CALCIUM ION × 5 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 HTG heptyl 1-thio-beta-D-glucopyranoside × 20 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 10 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 RRX (3R)-beta,beta-caroten-3-ol × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6.1；285 K；Mes,NaCl,CaCl2,MgSO4
|
分辨率 1.87 Å R-free 0.212 |
| 5B66 Crystal structure analysis of Photosystem II complex 提交 2016-05-25 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 38 PDB 声明：38-meric（38） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 20 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 10 CL CHLORIDE ION × 4 UNL UNKNOWN LIGAND × 55 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 DMS DIMETHYL SULFOXIDE × 95 FE2 FE (II) ION × 2 OEX CA-MN4-O5 CLUSTER × 2 BCT BICARBONATE ION × 2 HTG heptyl 1-thio-beta-D-glucopyranoside × 21 CA CALCIUM ION × 6 LMT DODECYL-BETA-D-MALTOSIDE × 17 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 10 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 9 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 RRX (3R)-beta,beta-caroten-3-ol × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6.1；285 K；Mes, NaCl, CaCl2, MgSO4, PEG 1450
|
分辨率 1.85 Å R-free 0.201 |
| 5GTH Native XFEL structure of photosystem II (dark dataset) 提交 2016-08-20 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 20 PDB 声明：eicosameric（20） 与蛋白数一致 |
链 O
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 1 CL CHLORIDE ION × 2 CLA CHLOROPHYLL A × 35 PHO PHEOPHYTIN A × 2 BCR BETA-CAROTENE × 11 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 5 GOL GLYCEROL × 4 OEX CA-MN4-O5 CLUSTER × 1 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 2 UNL UNKNOWN LIGAND × 9 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 BCT BICARBONATE ION × 1 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 HTG heptyl 1-thio-beta-D-glucopyranoside × 8 LMT DODECYL-BETA-D-MALTOSIDE × 9 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 4 CA CALCIUM ION × 3 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MG MAGNESIUM ION × 1 HEC HEME C × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.50 Å R-free 0.186 |
| 5GTH Native XFEL structure of photosystem II (dark dataset) 提交 2016-08-20 | Assembly 2 蛋白异源复合物 异源复合物；蛋白 × 19 PDB 声明：nonadecameric（19） 与蛋白数一致 |
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 1 CL CHLORIDE ION × 2 CLA CHLOROPHYLL A × 35 PHO PHEOPHYTIN A × 2 BCR BETA-CAROTENE × 11 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 3 GOL GLYCEROL × 3 OEX CA-MN4-O5 CLUSTER × 1 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 2 UNL UNKNOWN LIGAND × 9 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 BCT BICARBONATE ION × 1 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 HTG heptyl 1-thio-beta-D-glucopyranoside × 7 LMT DODECYL-BETA-D-MALTOSIDE × 5 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 4 CA CALCIUM ION × 3 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MG MAGNESIUM ION × 1 HEC HEME C × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.50 Å R-free 0.186 |
| 5GTI Native XFEL structure of photosystem II (two flash dataset) 提交 2016-08-20 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 20 PDB 声明：eicosameric（20） 与蛋白数一致 |
链 O
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 1 CL CHLORIDE ION × 2 CLA CHLOROPHYLL A × 35 PHO PHEOPHYTIN A × 2 BCR BETA-CAROTENE × 11 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 5 GOL GLYCEROL × 5 OEX CA-MN4-O5 CLUSTER × 1 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 2 UNL UNKNOWN LIGAND × 9 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 BCT BICARBONATE ION × 1 CA CALCIUM ION × 4 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 LMT DODECYL-BETA-D-MALTOSIDE × 9 HTG heptyl 1-thio-beta-D-glucopyranoside × 9 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 4 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MG MAGNESIUM ION × 1 HEC HEME C × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.50 Å R-free 0.187 |
| 5GTI Native XFEL structure of photosystem II (two flash dataset) 提交 2016-08-20 | Assembly 2 蛋白异源复合物 异源复合物；蛋白 × 19 PDB 声明：nonadecameric（19） 与蛋白数一致 |
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 1 CL CHLORIDE ION × 2 CLA CHLOROPHYLL A × 35 PHO PHEOPHYTIN A × 2 BCR BETA-CAROTENE × 11 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 3 GOL GLYCEROL × 3 OEX CA-MN4-O5 CLUSTER × 1 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 2 UNL UNKNOWN LIGAND × 9 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 BCT BICARBONATE ION × 1 CA CALCIUM ION × 3 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 LMT DODECYL-BETA-D-MALTOSIDE × 5 HTG heptyl 1-thio-beta-D-glucopyranoside × 8 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 4 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MG MAGNESIUM ION × 1 HEC HEME C × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.50 Å R-free 0.187 |
| 5V2C RE-REFINEMENT OF CRYSTAL STRUCTURE OF PHOTOSYSTEM II COMPLEX 提交 2017-03-03 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 38 PDB 声明：38-meric（38） 与蛋白数一致 |
链 O
2–244（243 aa）
链 o
2–244（243 aa）
|
未记录 | OEX CA-MN4-O5 CLUSTER × 2 FE2 FE (II) ION × 2 CL CHLORIDE ION × 6 BCT BICARBONATE ION × 3 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 11 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 14 GOL GLYCEROL × 60 LMT DODECYL-BETA-D-MALTOSIDE × 18 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 12 PG4 TETRAETHYLENE GLYCOL × 57 PGE TRIETHYLENE GLYCOL × 65 P6G HEXAETHYLENE GLYCOL × 17 EDO 1,2-ETHANEDIOL × 22 CA CALCIUM ION × 6 HTG heptyl 1-thio-beta-D-glucopyranoside × 24 1PE PENTAETHYLENE GLYCOL × 7 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 10 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 4 HEC HEME C × 2 2PE NONAETHYLENE GLYCOL × 1 PE8 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
EVAPORATION, RECRYSTALLIZATION；pH 6.1；285 K；5% PEG1450, 20MM NACL, 10MM CACL2,
40MM MGSO4, 20MM MES BUFFER, PH 6.1, MICRO-BATCH METHOD UNDER
OIL, TEMPERATURE 285K
|
分辨率 1.90 Å R-free 0.163 |
| 5WS5 Native XFEL structure of photosystem II (preflash dark dataset) 提交 2016-12-05 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 20 PDB 声明：eicosameric（20） 与蛋白数一致 |
链 O
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 1 CL CHLORIDE ION × 2 CLA CHLOROPHYLL A × 35 PHO PHEOPHYTIN A × 2 BCR BETA-CAROTENE × 11 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 4 GOL GLYCEROL × 5 OEX CA-MN4-O5 CLUSTER × 1 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 2 UNL UNKNOWN LIGAND × 9 BCT BICARBONATE ION × 1 LMT DODECYL-BETA-D-MALTOSIDE × 6 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 HTG heptyl 1-thio-beta-D-glucopyranoside × 6 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 4 CA CALCIUM ION × 3 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MG MAGNESIUM ION × 1 HEC HEME C × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.35 Å R-free 0.171 |
| 5WS5 Native XFEL structure of photosystem II (preflash dark dataset) 提交 2016-12-05 | Assembly 2 蛋白异源复合物 异源复合物；蛋白 × 19 PDB 声明：nonadecameric（19） 与蛋白数一致 |
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 1 CL CHLORIDE ION × 2 CLA CHLOROPHYLL A × 35 PHO PHEOPHYTIN A × 2 BCR BETA-CAROTENE × 11 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 4 GOL GLYCEROL × 5 OEX CA-MN4-O5 CLUSTER × 1 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 2 UNL UNKNOWN LIGAND × 9 BCT BICARBONATE ION × 1 LMT DODECYL-BETA-D-MALTOSIDE × 8 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 HTG heptyl 1-thio-beta-D-glucopyranoside × 5 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 4 CA CALCIUM ION × 4 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MG MAGNESIUM ION × 1 HEC HEME C × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.35 Å R-free 0.171 |
| 5WS6 Native XFEL structure of Photosystem II (preflash two-flash dataset 提交 2016-12-05 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 20 PDB 声明：eicosameric（20） 与蛋白数一致 |
链 O
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 1 CL CHLORIDE ION × 2 BCT BICARBONATE ION × 1 CLA CHLOROPHYLL A × 35 PHO PHEOPHYTIN A × 2 BCR BETA-CAROTENE × 11 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 4 GOL GLYCEROL × 5 OEX CA-MN4-O5 CLUSTER × 1 OEY CA-MN4-O6 CLUSTER × 1 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 2 UNL UNKNOWN LIGAND × 9 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 LMT DODECYL-BETA-D-MALTOSIDE × 7 HTG heptyl 1-thio-beta-D-glucopyranoside × 8 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 4 CA CALCIUM ION × 3 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MG MAGNESIUM ION × 1 HEC HEME C × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.35 Å R-free 0.175 |
| 5WS6 Native XFEL structure of Photosystem II (preflash two-flash dataset 提交 2016-12-05 | Assembly 2 蛋白异源复合物 异源复合物；蛋白 × 19 PDB 声明：nonadecameric（19） 与蛋白数一致 |
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 1 CL CHLORIDE ION × 2 BCT BICARBONATE ION × 1 CLA CHLOROPHYLL A × 35 PHO PHEOPHYTIN A × 2 BCR BETA-CAROTENE × 11 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 4 GOL GLYCEROL × 5 OEX CA-MN4-O5 CLUSTER × 1 OEY CA-MN4-O6 CLUSTER × 1 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 2 UNL UNKNOWN LIGAND × 9 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 LMT DODECYL-BETA-D-MALTOSIDE × 7 HTG heptyl 1-thio-beta-D-glucopyranoside × 7 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 4 CA CALCIUM ION × 5 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MG MAGNESIUM ION × 1 HEC HEME C × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.35 Å R-free 0.175 |
| 6JLJ XFEL structure of cyanobacterial photosystem II (dark state, dataset1) 提交 2019-03-06 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 6 BCT BICARBONATE ION × 2 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 35 LMT DODECYL-BETA-D-MALTOSIDE × 14 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 CA CALCIUM ION × 9 HTG heptyl 1-thio-beta-D-glucopyranoside × 17 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 10 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.15 Å R-free 0.198 |
| 6JLK XFEL structure of cyanobacterial photosystem II (1F state, dataset1) 提交 2019-03-06 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 6 BCT BICARBONATE ION × 2 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 35 LMT DODECYL-BETA-D-MALTOSIDE × 14 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 CA CALCIUM ION × 9 HTG heptyl 1-thio-beta-D-glucopyranoside × 17 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 10 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.15 Å R-free 0.193 |
| 6JLL XFEL structure of cyanobacterial photosystem II (2F state, dataset1) 提交 2019-03-06 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 6 BCT BICARBONATE ION × 2 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 35 LMT DODECYL-BETA-D-MALTOSIDE × 14 OEX CA-MN4-O5 CLUSTER × 2 OEY CA-MN4-O6 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 CA CALCIUM ION × 9 HTG heptyl 1-thio-beta-D-glucopyranoside × 17 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 10 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；298 K；PEG, magnesium sulfate
|
分辨率 2.15 Å R-free 0.203 |
| 6JLM XFEL structure of cyanobacterial photosystem II (dark state, dataset2) 提交 2019-03-06 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 6 BCT BICARBONATE ION × 2 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 35 LMT DODECYL-BETA-D-MALTOSIDE × 14 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 CA CALCIUM ION × 9 HTG heptyl 1-thio-beta-D-glucopyranoside × 17 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 10 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.35 Å R-free 0.209 |
| 6JLN XFEL structure of cyanobacterial photosystem II (1F state, dataset2) 提交 2019-03-06 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 6 BCT BICARBONATE ION × 2 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 35 LMT DODECYL-BETA-D-MALTOSIDE × 14 OEX CA-MN4-O5 CLUSTER × 4 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 CA CALCIUM ION × 9 HTG heptyl 1-thio-beta-D-glucopyranoside × 17 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 10 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.40 Å R-free 0.212 |
| 6JLO XFEL structure of cyanobacterial photosystem II (2F state, dataset2) 提交 2019-03-06 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | CL CHLORIDE ION × 6 BCT BICARBONATE ION × 2 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 35 LMT DODECYL-BETA-D-MALTOSIDE × 14 OEX CA-MN4-O5 CLUSTER × 2 OEY CA-MN4-O6 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 CA CALCIUM ION × 9 HTG heptyl 1-thio-beta-D-glucopyranoside × 17 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 10 FE2 FE (II) ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.40 Å R-free 0.207 |
| 6JLP XFEL structure of cyanobacterial photosystem II (3F state, dataset2) 提交 2019-03-06 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 6 CLA CHLOROPHYLL A × 70 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 35 LMT DODECYL-BETA-D-MALTOSIDE × 14 OEX CA-MN4-O5 CLUSTER × 2 OEY CA-MN4-O6 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 CA CALCIUM ION × 9 HTG heptyl 1-thio-beta-D-glucopyranoside × 17 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 10 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 BCT BICARBONATE ION × 2 PHO PHEOPHYTIN A × 4 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.50 Å R-free 0.211 |
| 7CJI Photosystem II structure in the S1 state 提交 2020-07-11 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 GOL GLYCEROL × 12 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 LMT DODECYL-BETA-D-MALTOSIDE × 14 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 BCT BICARBONATE ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.35 Å R-free 0.208 |
| 7CJJ Photosystem II structure in the S2 state 提交 2020-07-11 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 12 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 LMT DODECYL-BETA-D-MALTOSIDE × 14 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 BCT BICARBONATE ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.40 Å R-free 0.218 |
| 7COU Structure of cyanobacterial photosystem II in the dark S1 state 提交 2020-08-05 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 GOL GLYCEROL × 12 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 LMT DODECYL-BETA-D-MALTOSIDE × 14 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 BCT BICARBONATE ION × 2 HEC HEME C × 4 MG MAGNESIUM ION × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
BATCH MODE；293 K；PEG, magnesium sulfate
|
分辨率 2.25 Å R-free 0.211 |
| 7D1T Cryo-EM Structure of PSII at 1.95 angstrom resolution 提交 2020-09-15 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 40 PDB 声明：40-meric（40） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | OEX CA-MN4-O5 CLUSTER × 2 FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 20 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 36 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 10 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 LMT DODECYL-BETA-D-MALTOSIDE × 8 BCT BICARBONATE ION × 2 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 RRX (3R)-beta,beta-caroten-3-ol × 2 | ELECTRON MICROSCOPY |
cryo-EM缓冲液
pH 6
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 1.95 Å |
| 7D1U Cryo-EM Structure of PSII at 2.08 angstrom resolution 提交 2020-09-15 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 40 PDB 声明：40-meric（40） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | OEX CA-MN4-O5 CLUSTER × 2 FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 20 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 36 BCT BICARBONATE ION × 2 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 10 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 RRX (3R)-beta,beta-caroten-3-ol × 2 LMT DODECYL-BETA-D-MALTOSIDE × 8 MG MAGNESIUM ION × 2 HEC HEME C × 2 | ELECTRON MICROSCOPY |
cryo-EM缓冲液
pH 6
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.08 Å |
| 7EDA Structure of monomeric photosystem II 提交 2021-03-15 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 20 PDB 声明：eicosameric（20） 与蛋白数一致 |
链 O
1–244（244 aa）
|
未记录 | OEX CA-MN4-O5 CLUSTER × 1 FE2 FE (II) ION × 1 CLA CHLOROPHYLL A × 35 PHO PHEOPHYTIN A × 2 BCR BETA-CAROTENE × 8 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 2 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 2 UNL UNKNOWN LIGAND × 1 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 4 BCT BICARBONATE ION × 1 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 RRX (3R)-beta,beta-caroten-3-ol × 1 HEC HEME C × 1 | ELECTRON MICROSCOPY |
cryo-EM缓冲液
pH 6
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.78 Å |
| 8GN0 Crystal structure of DCBQ-bound photosystem II complex 提交 2022-08-22 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 38 PDB 声明：38-meric（38） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | OEX CA-MN4-O5 CLUSTER × 2 FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 20 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 9 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 10 LMT DODECYL-BETA-D-MALTOSIDE × 18 GOL GLYCEROL × 30 UNL UNKNOWN LIGAND × 37 JOX 2,6-bis(chloranyl)cyclohexa-2,5-diene-1,4-dione × 4 BCT BICARBONATE ION × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 DMS DIMETHYL SULFOXIDE × 134 CA CALCIUM ION × 5 HTG heptyl 1-thio-beta-D-glucopyranoside × 22 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 9 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 RRX (3R)-beta,beta-caroten-3-ol × 2 MG MAGNESIUM ION × 4 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6.1；285 K；5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM MES buffer, pH 6.1, MICRO-BATCH METHOD UNDER OIL, temperature 285K
|
分辨率 2.15 Å R-free 0.185 |
| 8GN1 Crystal structure of DBBQ-bound photosystem II complex 提交 2022-08-22 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | OEX CA-MN4-O5 CLUSTER × 2 FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 20 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 10 LMT DODECYL-BETA-D-MALTOSIDE × 20 UNL UNKNOWN LIGAND × 44 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 K2I 2,5-bis(bromanyl)cyclohexa-2,5-diene-1,4-dione × 4 BCT BICARBONATE ION × 2 DMS DIMETHYL SULFOXIDE × 128 CA CALCIUM ION × 5 HTG heptyl 1-thio-beta-D-glucopyranoside × 21 GOL GLYCEROL × 21 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 9 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 RRX (3R)-beta,beta-caroten-3-ol × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6.1；285 K；5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM MES buffer, pH 6.1, MICRO-BATCH METHOD UNDER OIL, temperature 285K
|
分辨率 2.10 Å R-free 0.191 |
| 8GN2 Crystal structure of PPBQ-bound photosystem II complex 提交 2022-08-22 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | OEX CA-MN4-O5 CLUSTER × 2 FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 20 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 10 LMT DODECYL-BETA-D-MALTOSIDE × 17 GOL GLYCEROL × 48 UNL UNKNOWN LIGAND × 57 K3C 2-phenylcyclohexa-2,5-diene-1,4-dione × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 BCT BICARBONATE ION × 2 CA CALCIUM ION × 7 HTG heptyl 1-thio-beta-D-glucopyranoside × 21 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 DMS DIMETHYL SULFOXIDE × 31 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 9 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 RRX (3R)-beta,beta-caroten-3-ol × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6.1；285 K；5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM MES buffer, pH 6.1, MICRO-BATCH METHOD UNDER OIL, temperature 285K
|
分辨率 1.95 Å R-free 0.181 |
| 8IR5 XFEL structure of cyanobacterial photosystem II under dark conditions 提交 2023-03-17 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 21 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LMT DODECYL-BETA-D-MALTOSIDE × 14 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 BCT BICARBONATE ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6；293 K；5.5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM Mes BUFFER
|
分辨率 2.15 Å R-free 0.175 |
| 8IR6 XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 20-nanosecond delay 提交 2023-03-17 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 21 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LMT DODECYL-BETA-D-MALTOSIDE × 14 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 BCT BICARBONATE ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6；293 K；5.5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM Mes BUFFER
|
分辨率 2.20 Å R-free 0.179 |
| 8IR7 XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-nanosecond delay 提交 2023-03-17 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 21 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LMT DODECYL-BETA-D-MALTOSIDE × 14 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 BCT BICARBONATE ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6；293 K；5.5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM Mes BUFFER
|
分辨率 2.25 Å R-free 0.177 |
| 8IR8 XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 1-microsecond delay 提交 2023-03-17 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 21 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LMT DODECYL-BETA-D-MALTOSIDE × 14 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 BCT BICARBONATE ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6；293 K；5.5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM Mes BUFFER
|
分辨率 2.25 Å R-free 0.175 |
| 8IR9 XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 30-microsecond delay 提交 2023-03-17 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 21 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 BCT BICARBONATE ION × 2 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 LMT DODECYL-BETA-D-MALTOSIDE × 14 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6；293 K；5.5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM Mes BUFFER
|
分辨率 2.20 Å R-free 0.176 |
| 8IRA XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-microsecond delay 提交 2023-03-17 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 21 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LMT DODECYL-BETA-D-MALTOSIDE × 14 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 BCT BICARBONATE ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6；293 K；5.5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM Mes BUFFER
|
分辨率 2.20 Å R-free 0.178 |
| 8IRB XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay 提交 2023-03-17 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 21 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 BCT BICARBONATE ION × 2 LMT DODECYL-BETA-D-MALTOSIDE × 14 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6；293 K；5.5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM Mes BUFFER
|
分辨率 2.30 Å R-free 0.180 |
| 8IRC XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay (Single conformation) 提交 2023-03-17 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 21 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 BCT BICARBONATE ION × 2 LMT DODECYL-BETA-D-MALTOSIDE × 14 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6；293 K；5.5% PEG 1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM Mes BUFFER, pH
6.0, micro-batch, RT.
|
分辨率 2.25 Å R-free 0.180 |
| 8IRD XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 20-nanosecond delay 提交 2023-03-17 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 21 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 BCT BICARBONATE ION × 2 PHO PHEOPHYTIN A × 4 LMT DODECYL-BETA-D-MALTOSIDE × 14 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6；293 K；5.5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM Mes BUFFER
|
分辨率 2.30 Å R-free 0.183 |
| 8IRE XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 200-nanosecond delay 提交 2023-03-17 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 21 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 BCT BICARBONATE ION × 2 LMT DODECYL-BETA-D-MALTOSIDE × 14 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6；293 K；5.5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM Mes BUFFER
|
分辨率 2.25 Å R-free 0.177 |
| 8IRF XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 1-microsecond delay 提交 2023-03-17 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 21 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LMT DODECYL-BETA-D-MALTOSIDE × 14 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 BCT BICARBONATE ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6；293 K；5.5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM Mes BUFFER
|
分辨率 2.25 Å R-free 0.177 |
| 8IRG XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 30-microsecond delay 提交 2023-03-17 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 BCR BETA-CAROTENE × 22 GOL GLYCEROL × 21 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 BCT BICARBONATE ION × 2 LMT DODECYL-BETA-D-MALTOSIDE × 14 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 PHO PHEOPHYTIN A × 4 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6；293 K；5.5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM Mes BUFFER
|
分辨率 2.30 Å R-free 0.180 |
| 8IRH XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 200-microsecond delay 提交 2023-03-17 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | OEY CA-MN4-O6 CLUSTER × 2 FE2 FE (II) ION × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 21 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LMT DODECYL-BETA-D-MALTOSIDE × 14 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 BCT BICARBONATE ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6；293 K；5.5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM Mes BUFFER
|
分辨率 2.25 Å R-free 0.183 |
| 8IRI XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 5-millisecond delay 提交 2023-03-17 | Assembly 1 蛋白异源复合物 异源复合物；蛋白 × 39 PDB 声明：39-meric（39） 与蛋白数一致 |
链 O
1–244（244 aa）
链 o
1–244（244 aa）
|
未记录 | OEY CA-MN4-O6 CLUSTER × 2 CL CHLORIDE ION × 4 CLA CHLOROPHYLL A × 70 PHO PHEOPHYTIN A × 4 BCR BETA-CAROTENE × 22 SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 8 GOL GLYCEROL × 21 OEX CA-MN4-O5 CLUSTER × 2 PL9 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE × 4 UNL UNKNOWN LIGAND × 18 LMT DODECYL-BETA-D-MALTOSIDE × 14 LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 HTG heptyl 1-thio-beta-D-glucopyranoside × 11 DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 8 CA CALCIUM ION × 7 FE2 FE (II) ION × 2 BCT BICARBONATE ION × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 MG MAGNESIUM ION × 2 HEC HEME C × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
MICROBATCH；pH 6；293 K；5.5% PEG1450, 20mM NaCl, 10mM CaCl2, 40mM MgSO4, 20mM Mes BUFFER
|
分辨率 2.25 Å R-free 0.181 |