当前蛋白身份：P0DKX7
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差异标签只比较当前检索结果；所有PDB和assembly原始记录仍分别保留。
相关结构差异明细
一行代表一个 PDB 条目中的一个 biological assembly；同一蛋白的多个单体会分别列出。
| PDB 条目 | Assembly / 聚集状态 | 构建体 | 突变与修饰 | 配体、离子与非聚合物 | 实验方法 | 实验环境 | 结构质量 |
|---|---|---|---|---|---|---|---|
| 5CXL CRYSTAL STRUCTURE OF RTX DOMAIN BLOCK V OF ADENYLATE CYCLASE TOXIN FROM BORDETELLA PERTUSSIS 提交 2015-07-29 | Assembly 1 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 A
1529–1681（153 aa）
片段：BLOCK V OF RTX DOMAIN (UNP RESISDUES 1529-1681)
|
未记录 | CA CALCIUM ION × 8 NO3 NITRATE ION × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 7；291.15 K；BUFFER COMPOSITION: 5 mM TRIS-HCL PH=7.4, 150 mM NaCl, 10 mM CaCl2. PRECIPITANT COMPOSITION: 0.2 M MAGNESIUM NITRATE, 20% V/V PEG 3350,
|
分辨率 1.45 Å R-free 0.207 |
| 5CXL CRYSTAL STRUCTURE OF RTX DOMAIN BLOCK V OF ADENYLATE CYCLASE TOXIN FROM BORDETELLA PERTUSSIS 提交 2015-07-29 | Assembly 2 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 B
1529–1681（153 aa）
片段：BLOCK V OF RTX DOMAIN (UNP RESISDUES 1529-1681)
|
未记录 | CA CALCIUM ION × 8 NO3 NITRATE ION × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 7；291.15 K；BUFFER COMPOSITION: 5 mM TRIS-HCL PH=7.4, 150 mM NaCl, 10 mM CaCl2. PRECIPITANT COMPOSITION: 0.2 M MAGNESIUM NITRATE, 20% V/V PEG 3350,
|
分辨率 1.45 Å R-free 0.207 |
| 6SUS Crystal structure of RTX domain blocks IV and V of adenylate cyclase toxin from Bordetella pertussis 提交 2019-09-16 | Assembly 1 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 A
1371–1690（320 aa）
|
未记录 | CA CALCIUM ION × 15 PGE TRIETHYLENE GLYCOL × 2 GOL GLYCEROL × 2 NO3 NITRATE ION × 1 EDO 1,2-ETHANEDIOL × 3 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, HANGING DROP；291 K；0.2 M NH4NO3
20% w/v PEG 3350
|
分辨率 1.76 Å R-free 0.201 |
| 9P0C Crystal structure of Ca2+-bound RTX domain block V of adenylate cyclase toxin from Bordetella pertussis 提交 2025-06-06 | Assembly 1 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 A
1529–1680（152 aa）
|
未记录 | CA CALCIUM ION × 8 ZN ZINC ION × 1 CL CHLORIDE ION × 1 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 8.5；289.15 K；Buffer: 40 mM polyamines, 100 mM glycylglycine and 2-Amino-2-methyl-1,3-propanediol (AMPD), pH 8.5. Precipitant: 31% v/v of 10% w/v PEG 20k, 50% w/v trimethylpropane (TMP), 2% w/v NDSB-195.
|
分辨率 1.70 Å R-free 0.208 |
| 9P0C Crystal structure of Ca2+-bound RTX domain block V of adenylate cyclase toxin from Bordetella pertussis 提交 2025-06-06 | Assembly 2 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 B
1529–1680（152 aa）
|
未记录 | CA CALCIUM ION × 8 ZN ZINC ION × 3 GOL GLYCEROL × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 8.5；289.15 K；Buffer: 40 mM polyamines, 100 mM glycylglycine and 2-Amino-2-methyl-1,3-propanediol (AMPD), pH 8.5. Precipitant: 31% v/v of 10% w/v PEG 20k, 50% w/v trimethylpropane (TMP), 2% w/v NDSB-195.
|
分辨率 1.70 Å R-free 0.208 |
| 9P0D Crystal structure of Sr2+-bound RTX domain block V of adenylate cyclase toxin from Bordetella pertussis 提交 2025-06-06 | Assembly 1 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 A
1529–1680（152 aa）
|
未记录 | SR STRONTIUM ION × 8 CL CHLORIDE ION × 1 NA SODIUM ION × 1 FOR FORMYL GROUP × 2 GOL GLYCEROL × 1 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 2 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 6.5；289 K；Buffer: 100 mM amino acids, 100 mM imidazole, 100 mM 2-(N-morpholino)ethanesulfonic
acid (MES), pH 6.5.
Precipitant: 37.5% v/v of 25% v/v 2-Methyl-2,4-pentanediol (MPD), 25% w/v PEG 1000, 25% w/v PEG 3350
|
分辨率 1.50 Å R-free 0.201 |
| 9P6C RTX domain block V of adenylate cyclase toxin with mutations D1533N, A1542N, D1560N, S1569N, D1587N, H1598N, H1608N 提交 2025-06-18 | Assembly 1 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 A
1529–1680（152 aa）
|
突变：D1533N, A1542N, D1560N, S1569N, D1587N, H1598N, H1608N | CA CALCIUM ION × 8 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 6.5；289 K；Buffer: 0.1 M MES, 0.1 M imidazole, pH 6.5
Precipitant: 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD; 0.02 M of each amino acid (L-glutamate, DL-alanine, glycine, DL-lysine, and DL-serine)
Protein solution: 50 mM Tris, 150 mM NaCl, 10 mM CaCl2, pH 8
|
分辨率 1.99 Å R-free 0.292 |
| 9P6C RTX domain block V of adenylate cyclase toxin with mutations D1533N, A1542N, D1560N, S1569N, D1587N, H1598N, H1608N 提交 2025-06-18 | Assembly 2 蛋白单体 单体；蛋白 × 1 PDB 声明：monomeric（1） 与蛋白数一致 |
链 B
1529–1680（152 aa）
|
突变：D1533N, A1542N, D1560N, S1569N, D1587N, H1598N, H1608N | CA CALCIUM ION × 8 | X-RAY DIFFRACTION |
X-ray结晶条件
VAPOR DIFFUSION, SITTING DROP；pH 6.5；289 K；Buffer: 0.1 M MES, 0.1 M imidazole, pH 6.5
Precipitant: 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD; 0.02 M of each amino acid (L-glutamate, DL-alanine, glycine, DL-lysine, and DL-serine)
Protein solution: 50 mM Tris, 150 mM NaCl, 10 mM CaCl2, pH 8
|
分辨率 1.99 Å R-free 0.292 |