Current Protein Identity：P0DKX7
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Difference tags compare only the current result set; every original PDB and assembly record remains separate.
Related-Structure Differences
Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.
| PDB Entry | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Experimental Method | Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 5CXL CRYSTAL STRUCTURE OF RTX DOMAIN BLOCK V OF ADENYLATE CYCLASE TOXIN FROM BORDETELLA PERTUSSIS Deposited 2015-07-29 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
1529–1681（153 aa）
Fragment：BLOCK V OF RTX DOMAIN (UNP RESISDUES 1529-1681)
|
Not recorded | CA CALCIUM ION × 8 NO3 NITRATE ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；291.15 K；BUFFER COMPOSITION: 5 mM TRIS-HCL PH=7.4, 150 mM NaCl, 10 mM CaCl2. PRECIPITANT COMPOSITION: 0.2 M MAGNESIUM NITRATE, 20% V/V PEG 3350,
|
Resolution 1.45 Å R-free 0.207 |
| 5CXL CRYSTAL STRUCTURE OF RTX DOMAIN BLOCK V OF ADENYLATE CYCLASE TOXIN FROM BORDETELLA PERTUSSIS Deposited 2015-07-29 | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain B
1529–1681（153 aa）
Fragment：BLOCK V OF RTX DOMAIN (UNP RESISDUES 1529-1681)
|
Not recorded | CA CALCIUM ION × 8 NO3 NITRATE ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；291.15 K；BUFFER COMPOSITION: 5 mM TRIS-HCL PH=7.4, 150 mM NaCl, 10 mM CaCl2. PRECIPITANT COMPOSITION: 0.2 M MAGNESIUM NITRATE, 20% V/V PEG 3350,
|
Resolution 1.45 Å R-free 0.207 |
| 6SUS Crystal structure of RTX domain blocks IV and V of adenylate cyclase toxin from Bordetella pertussis Deposited 2019-09-16 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
1371–1690（320 aa）
|
Not recorded | CA CALCIUM ION × 15 PGE TRIETHYLENE GLYCOL × 2 GOL GLYCEROL × 2 NO3 NITRATE ION × 1 EDO 1,2-ETHANEDIOL × 3 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；291 K；0.2 M NH4NO3
20% w/v PEG 3350
|
Resolution 1.76 Å R-free 0.201 |
| 9P0C Crystal structure of Ca2+-bound RTX domain block V of adenylate cyclase toxin from Bordetella pertussis Deposited 2025-06-06 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
1529–1680（152 aa）
|
Not recorded | CA CALCIUM ION × 8 ZN ZINC ION × 1 CL CHLORIDE ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；289.15 K；Buffer: 40 mM polyamines, 100 mM glycylglycine and 2-Amino-2-methyl-1,3-propanediol (AMPD), pH 8.5. Precipitant: 31% v/v of 10% w/v PEG 20k, 50% w/v trimethylpropane (TMP), 2% w/v NDSB-195.
|
Resolution 1.70 Å R-free 0.208 |
| 9P0C Crystal structure of Ca2+-bound RTX domain block V of adenylate cyclase toxin from Bordetella pertussis Deposited 2025-06-06 | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain B
1529–1680（152 aa）
|
Not recorded | CA CALCIUM ION × 8 ZN ZINC ION × 3 GOL GLYCEROL × 2 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；289.15 K；Buffer: 40 mM polyamines, 100 mM glycylglycine and 2-Amino-2-methyl-1,3-propanediol (AMPD), pH 8.5. Precipitant: 31% v/v of 10% w/v PEG 20k, 50% w/v trimethylpropane (TMP), 2% w/v NDSB-195.
|
Resolution 1.70 Å R-free 0.208 |
| 9P0D Crystal structure of Sr2+-bound RTX domain block V of adenylate cyclase toxin from Bordetella pertussis Deposited 2025-06-06 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
1529–1680（152 aa）
|
Not recorded | SR STRONTIUM ION × 8 CL CHLORIDE ION × 1 NA SODIUM ION × 1 FOR FORMYL GROUP × 2 GOL GLYCEROL × 1 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 2 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；289 K；Buffer: 100 mM amino acids, 100 mM imidazole, 100 mM 2-(N-morpholino)ethanesulfonic
acid (MES), pH 6.5.
Precipitant: 37.5% v/v of 25% v/v 2-Methyl-2,4-pentanediol (MPD), 25% w/v PEG 1000, 25% w/v PEG 3350
|
Resolution 1.50 Å R-free 0.201 |
| 9P6C RTX domain block V of adenylate cyclase toxin with mutations D1533N, A1542N, D1560N, S1569N, D1587N, H1598N, H1608N Deposited 2025-06-18 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
1529–1680（152 aa）
|
Mutation：D1533N, A1542N, D1560N, S1569N, D1587N, H1598N, H1608N | CA CALCIUM ION × 8 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；289 K；Buffer: 0.1 M MES, 0.1 M imidazole, pH 6.5
Precipitant: 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD; 0.02 M of each amino acid (L-glutamate, DL-alanine, glycine, DL-lysine, and DL-serine)
Protein solution: 50 mM Tris, 150 mM NaCl, 10 mM CaCl2, pH 8
|
Resolution 1.99 Å R-free 0.292 |
| 9P6C RTX domain block V of adenylate cyclase toxin with mutations D1533N, A1542N, D1560N, S1569N, D1587N, H1598N, H1608N Deposited 2025-06-18 | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain B
1529–1680（152 aa）
|
Mutation：D1533N, A1542N, D1560N, S1569N, D1587N, H1598N, H1608N | CA CALCIUM ION × 8 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；289 K；Buffer: 0.1 M MES, 0.1 M imidazole, pH 6.5
Precipitant: 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD; 0.02 M of each amino acid (L-glutamate, DL-alanine, glycine, DL-lysine, and DL-serine)
Protein solution: 50 mM Tris, 150 mM NaCl, 10 mM CaCl2, pH 8
|
Resolution 1.99 Å R-free 0.292 |