当前蛋白身份:Q16611 重新检索
本组结构的主要差异维度
构建体不同 突变/修饰不同 组装状态不同 配体/离子不同 实验方法不同 实验环境不同 结构质量指标不同

差异标签只比较当前检索结果;所有PDB和assembly原始记录仍分别保留。

相关结构差异明细

一行代表一个 PDB 条目中的一个 biological assembly;同一蛋白的多个单体会分别列出。

PDB 条目 Assembly / 聚集状态 构建体 突变与修饰 配体、离子与非聚合物 实验方法 实验环境 结构质量
1BXL STRUCTURE OF BCL-XL/BAK PEPTIDE COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE 提交 1996-10-16 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 72–87(16 aa) 片段:RESIDUES 572 - 587 OF BAK PROTEIN
未记录 未记录非水小分子 SOLUTION NMR
NMR测量条件 303 K
分辨率未提供
2IMS The X-ray Structure of a Bak Homodimer Reveals an Inhibitory Zinc Binding Site 提交 2006-10-04 Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 16–186(171 aa)
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 2 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;PEG 3350 15-30% and 1-50 mM zinc acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
分辨率 1.48 Å R-free 0.204
2IMT The X-ray Structure of a Bak Homodimer Reveals an Inhibitory Zinc Binding Site 提交 2006-10-04 Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 16–186(171 aa)
未记录 ZN ZINC ION × 2 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;PEG 3350 15-30% and 0.2 M ammonium fluoride, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
分辨率 1.49 Å R-free 0.220
2IMT The X-ray Structure of a Bak Homodimer Reveals an Inhibitory Zinc Binding Site 提交 2006-10-04 Assembly 2 蛋白单体 单体;蛋白 × 1 PDB 声明:monomeric(1) 与蛋白数一致
链 A 16–186(171 aa)
未记录 ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;PEG 3350 15-30% and 0.2 M ammonium fluoride, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
分辨率 1.49 Å R-free 0.220
2JCN The crystal structure of BAK1 - a mitochondrial apoptosis regulator 提交 2006-12-27 Assembly 1 蛋白单体 单体;蛋白 × 1 PDB 声明:monomeric(1) 与蛋白数一致
链 A 21–190(170 aa)
未记录 SO4 SULFATE ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 pH 7.5;22% PEG3350, 20% GLYCEROL, 0.2M SODIUM SULPHATE, 2MM TCEP, 0.3M NACL, 20 MM HEPES PH7.5, pH 7.50
分辨率 1.80 Å R-free 0.232
2LP8 SOLUTION STRUCTURE OF AN APOPTOSIS ACTIVATING PHOTOSWITCHABLE BAK PEPTIDE BOUND to BCL-XL 提交 2012-02-03 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 72–87(16 aa) 片段:BH3 domain residues 72-87
突变:Q73C, Q77A, I80A, I81F, D84C 非标准单体:是(mmCIF未提供具体位点) 33B 3,3'-(E)-diazene-1,2-diylbis{6-[(chloroacetyl)amino]benzenesulfonic acid} × 1 SOLUTION NMR
NMR测量条件 pH 7.3;298 K;离子强度(mmCIF原始值)50;压力 AMBIENT
NMR样品组成 1 MM [U-98% 13C U-98% 15N] BCL- XL, 1.1 MM PHOTOSWITCHABLE BAK, 5 MM SODIUM PHOSPHATE, 5 MM 2- MERCAPTOETHANOL, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR样品组成 1 MM [U-98% 13C U-98% 15N] BCL- XL, 1.1 MM PHOTOSWITCHABLE BAK, 5 MM SODIUM PHOSPHATE, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR样品组成 1 MM [U-98% 13C U-98% 15N] BCL-XL, 1.1 MM PHOTOSWITCHABLE BAK, 5 MM SODIUM PHOSPHATE, 100% D2O | 90% H2O/10% D2O
分辨率未提供
2M5B The NMR structure of the BID-BAK complex 提交 2013-02-19 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 18–186(169 aa)
未记录 未记录非水小分子 SOLUTION NMR
NMR测量条件 pH 6.8;300 K;离子强度(mmCIF原始值)0;压力 ambient
NMR样品组成 ~0.5 mM [U-98% 13C; U-98% 15N] human cBAK, ~0.5 mM human BID BH3 SAHB, 90% H2O/10% D2O | 90% H2O/10% D2O
分辨率未提供
2XPX Crystal structure of BHRF1:Bak BH3 complex 提交 2010-08-31 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 67–92(26 aa) 片段:RESIDUES 67-92
未记录 NO3 NITRATE ION × 4 EDO 1,2-ETHANEDIOL × 2 X-RAY DIFFRACTION
X-ray结晶条件 pH 4.4;1.6 M NANO3, 50 MM MALIC ACID PH 4.4
分辨率 2.05 Å R-free 0.217
2YV6 Crystal structure of human Bcl-2 family protein Bak 提交 2007-04-09 Assembly 1 蛋白单体 单体;蛋白 × 1 PDB 声明:monomeric(1) 与蛋白数一致
链 A 23–185(163 aa) 片段:residues 23-185
非标准单体:是(mmCIF未提供具体位点) SO4 SULFATE ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 5.2;293 K;ammonium sulfate, iso-propanol, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
分辨率 2.50 Å R-free 0.248
3I1H Crystal structure of human BFL-1 in complex with BAK BH3 peptide 提交 2009-06-26 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 72–87(16 aa) 片段:BH3
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 5.8;298 K;1.5 M sodium malonate, pH 5.8 protein 1.67 mg/ml, VAPOR DIFFUSION, HANGING DROP, temperature 298K
分辨率 2.20 Å R-free 0.238
3QBR BakBH3 in complex with sjA 提交 2011-01-13 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 63–96(34 aa) 片段:BH3 (UNP RESIDUES 63-96)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 9;295 K;1M tri-sodium citrate, 0.1M CHES, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
分辨率 2.60 Å R-free 0.234
3QBR BakBH3 in complex with sjA 提交 2011-01-13 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 Y 63–96(34 aa) 片段:BH3 (UNP RESIDUES 63-96)
未记录 NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 9;295 K;1M tri-sodium citrate, 0.1M CHES, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
分辨率 2.60 Å R-free 0.234
4D2L Vaccinia Virus F1L bound to Bak BH3 提交 2014-05-12 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 B 67–91(25 aa) 片段:RESIDUES 67-91
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 pH 7.5;0.18 M AMMONIUM SULFATE AND 2.25 M LICL., pH 7.5
分辨率 2.90 Å R-free 0.228
4U2U Bak domain swapped dimer induced by BidBH3 with CHAPS 提交 2014-07-18 Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 23–186(164 aa) 片段:UNP residues 23-186
链 B 23–186(164 aa) 片段:UNP residues 23-186
突变:C166S 突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;291 K;26.7% PEG 3350, 0.05 M sodium acetate
分辨率 2.90 Å R-free 0.263
4U2V Bak BH3-in-Groove dimer (GFP) 提交 2014-07-18 Assembly 1 信息不足 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 68–148(81 aa) 片段:UNP P42212 residues 1-230, UNP Q16611 residues 68-148
链 C 68–148(81 aa) 片段:UNP P42212 residues 1-230, UNP Q16611 residues 68-148
非标准单体:是(mmCIF未提供具体位点) 非标准单体:是(mmCIF未提供具体位点) CAC CACODYLATE ION × 1 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;281 K;4.5% PEG 8000, 40% MPD, 100 mM tri-sodium citrate, 90 mM cacodylate acid pH 6.5 and 1% Octyl glucoside
分辨率 2.30 Å R-free 0.250
4U2V Bak BH3-in-Groove dimer (GFP) 提交 2014-07-18 Assembly 2 信息不足 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 68–148(81 aa) 片段:UNP P42212 residues 1-230, UNP Q16611 residues 68-148
链 D 68–148(81 aa) 片段:UNP P42212 residues 1-230, UNP Q16611 residues 68-148
非标准单体:是(mmCIF未提供具体位点) 非标准单体:是(mmCIF未提供具体位点) CAC CACODYLATE ION × 5 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;281 K;4.5% PEG 8000, 40% MPD, 100 mM tri-sodium citrate, 90 mM cacodylate acid pH 6.5 and 1% Octyl glucoside
分辨率 2.30 Å R-free 0.250
4UF1 Deerpox virus DPV022 in complex with Bak BH3 提交 2014-12-23 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 B 67–92(26 aa) 片段:BH3, UNP RESIDUES 67-92
未记录 SO4 SULFATE ION × 2 X-RAY DIFFRACTION
X-ray结晶条件 pH 5.5;17% PEG 8000, 0.2M MES PH 5.5, 0.2M AMMONIUM SULPHATE
分辨率 2.30 Å R-free 0.206
5AJK Crystal structure of variola virus virulence factor F1L in complex with human Bak BH3 domain 提交 2015-02-25 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 B 67–92(26 aa) 片段:RESIDUES 67-92
链 D 67–92(26 aa) 片段:RESIDUES 67-92
未记录 CL CHLORIDE ION × 2 ACT ACETATE ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 pH 5.2;1.7 M MGSO4, 0.1 M NA-ACETATE PH 5.2
分辨率 2.55 Å R-free 0.240
5AJK Crystal structure of variola virus virulence factor F1L in complex with human Bak BH3 domain 提交 2015-02-25 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 F 67–92(26 aa) 片段:RESIDUES 67-92
链 L 67–92(26 aa) 片段:RESIDUES 67-92
未记录 ACT ACETATE ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 pH 5.2;1.7 M MGSO4, 0.1 M NA-ACETATE PH 5.2
分辨率 2.55 Å R-free 0.240
5AJK Crystal structure of variola virus virulence factor F1L in complex with human Bak BH3 domain 提交 2015-02-25 Assembly 3 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 H 67–92(26 aa) 片段:RESIDUES 67-92
链 J 67–92(26 aa) 片段:RESIDUES 67-92
未记录 ACT ACETATE ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 pH 5.2;1.7 M MGSO4, 0.1 M NA-ACETATE PH 5.2
分辨率 2.55 Å R-free 0.240
5FMI Human Bak Q77L 提交 2015-11-06 Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 23–184(162 aa) 片段:UNP RESIDUES 23-184
突变:YES ZN ZINC ION × 6 X-RAY DIFFRACTION
X-ray结晶条件 pH 4.5;10% PEG 3350, 0.1M SODIUM ACETATE PH 4.5, 20 MM ZINC ACETATE
分辨率 1.49 Å R-free 0.211
5FMK Bcl-xL with Bak BH3 complex 提交 2015-11-06 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 B 63–96(34 aa) 片段:BH3 DOMAIN, UNP RESIDUES 63-96
未记录 GOL GLYCEROL × 8 X-RAY DIFFRACTION
X-ray结晶条件 pH 6.5;0.16M CALCIUM ACETATE, 0.08M SODIUM CACODYLATE, PH6.5, 20% GLYCEROL, 14.4% PEG 8000
分辨率 1.73 Å R-free 0.186
5VWV Bak core latch dimer in complex with Bim-BH3 - Cubic 提交 2017-05-23 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 23–186(164 aa) 片段:UNP residues 23-186
突变:C166S TFA trifluoroacetic acid × 1 EDO 1,2-ETHANEDIOL × 6 CL CHLORIDE ION × 1 GOL GLYCEROL × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;281 K;18 % glycerol, 21.6 % PEG (poly-ethylene glycol) 1500 and 0.5 % ethyl acetate
分辨率 1.90 Å R-free 0.177
5VWV Bak core latch dimer in complex with Bim-BH3 - Cubic 提交 2017-05-23 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 A 23–186(164 aa) 片段:UNP residues 23-186
突变:C166S TFA trifluoroacetic acid × 2 EDO 1,2-ETHANEDIOL × 12 CL CHLORIDE ION × 2 GOL GLYCEROL × 2 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;281 K;18 % glycerol, 21.6 % PEG (poly-ethylene glycol) 1500 and 0.5 % ethyl acetate
分辨率 1.90 Å R-free 0.177
5VWW Bak core latch dimer in complex with Bim-RT - Tetragonal 提交 2017-05-23 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 A 23–186(164 aa) 片段:UNP residues 23-186
链 B 23–186(164 aa) 片段:UNP residues 23-186
突变:C166S 突变:C166S MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 BR BROMIDE ION × 2 IMD IMIDAZOLE × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;281 K;12.5 % MPD (2-methyl-2,4-pentanediol), 38 mM imidazole pH 6.5, 12.5 % PEG 1000, 12.5 % PEG 3350, 30 mM sodium fluoride, 30 mM sodium iodide, 62 mM sodium MES pH 6.5 and 30 mM sodium bromide
分辨率 2.80 Å R-free 0.281
5VWX Bak core latch dimer in complex with Bim-h0-h3Glt 提交 2017-05-23 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 A 23–186(164 aa) 片段:UNP residues 23-186
链 C 23–186(164 aa) 片段:UNP residues 23-186
未记录 EDO 1,2-ETHANEDIOL × 3 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 5;281 K;200 mM calcium acetate, 30 % PEG 400 and 100 mM sodium acetate-acetic acid pH 5.0
分辨率 2.49 Å R-free 0.305
5VWY Bak core latch dimer in complex with Bim-h3Pc-RT 提交 2017-05-23 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 A 23–186(164 aa) 片段:UNP residues 23-186
突变:C166S PO4 PHOSPHATE ION × 2 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;277 K;15.8 % PEG 8000, 50 mM potassium dihydrogen phosphate, and 22.7 % glycerol
分辨率 1.55 Å R-free 0.216
5VWZ Bak in complex with Bim-h3Pc 提交 2017-05-23 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 A 23–186(164 aa) 片段:UNP residues 23-186
链 C 23–186(164 aa) 片段:UNP residues 23-186
突变:C166S 突变:C166S 1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL × 2 NH4 AMMONIUM ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;281 K;10 % PEG 20000, 20 % PEG MME 550, 38 mM Imidazole pH 6.5, 20 mM ammonium acetate, 20 mM potassium sodium tartrate, 20 mM sodium formate, 62 mM sodium MES pH 6.5, 20 mM trisodium citrate, and 20 mM sodium oxamate
分辨率 1.62 Å R-free 0.191
5VX0 Bak in complex with Bim-h3Glg 提交 2017-05-23 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 A 23–186(164 aa) 片段:UNP residues 23-186
链 C 23–186(164 aa) 片段:UNP residues 23-186
突变:C166S 突变:C166S MG MAGNESIUM ION × 6 EDO 1,2-ETHANEDIOL × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;281 K;200 mM magnesium chloride, 25 % PEG 3350, and 100 mM bis-tris chloride (pH 6.5)
分辨率 1.60 Å R-free 0.200
5VX1 Bak L100A 提交 2017-05-23 Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 23–186(164 aa) 片段:UNP residues 23-186
链 B 23–186(164 aa) 片段:UNP residues 23-186
突变:L100A, C166S 突变:L100A, C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;281 K;1M sodium malonate-malonic acid pH 7.0 and 10 % DL-malate-MES-tris pH 9
分辨率 1.22 Å R-free 0.193
6ODH BH3 domain swapped dimer of a BAK fragment 提交 2019-03-26 Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 71–147(77 aa) 片段:residues 71-147
链 B 71–147(77 aa) 片段:residues 71-147
未记录 SO4 SULFATE ION × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 2 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;277 K;12% PEG 3350 and 100 mM ammonium sulfate
分辨率 2.30 Å R-free 0.271
6ODH BH3 domain swapped dimer of a BAK fragment 提交 2019-03-26 Assembly 2 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 C 71–147(77 aa) 片段:residues 71-147
链 D 71–147(77 aa) 片段:residues 71-147
未记录 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 PEG DI(HYDROXYETHYL)ETHER × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;277 K;12% PEG 3350 and 100 mM ammonium sulfate
分辨率 2.30 Å R-free 0.271
6ODH BH3 domain swapped dimer of a BAK fragment 提交 2019-03-26 Assembly 3 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 E 71–147(77 aa) 片段:residues 71-147
链 F 71–147(77 aa) 片段:residues 71-147
未记录 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 2 PEG DI(HYDROXYETHYL)ETHER × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;277 K;12% PEG 3350 and 100 mM ammonium sulfate
分辨率 2.30 Å R-free 0.271
6UXM Crystal structure of BAK core domain BH3-groove-dimer in complex with E. coli lipid 提交 2019-11-07 Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 B 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 PEE 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine × 2 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 5.5;293 K;ammonium sulphate, PEG 10000, sodium acetate, bis-tris chloride
分辨率 2.49 Å R-free 0.237
6UXM Crystal structure of BAK core domain BH3-groove-dimer in complex with E. coli lipid 提交 2019-11-07 Assembly 2 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 C 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 D 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 PEE 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine × 2 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 5.5;293 K;ammonium sulphate, PEG 10000, sodium acetate, bis-tris chloride
分辨率 2.49 Å R-free 0.237
6UXM Crystal structure of BAK core domain BH3-groove-dimer in complex with E. coli lipid 提交 2019-11-07 Assembly 3 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 E 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 F 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 PEE 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine × 2 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 5.5;293 K;ammonium sulphate, PEG 10000, sodium acetate, bis-tris chloride
分辨率 2.49 Å R-free 0.237
6UXN Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylserine 提交 2019-11-07 Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 68–148(81 aa)
链 B 68–148(81 aa)
未记录 8SP O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine × 4 SO4 SULFATE ION × 3 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;293 K;ammonium sulphate
分辨率 2.49 Å R-free 0.253
6UXN Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylserine 提交 2019-11-07 Assembly 2 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 C 68–148(81 aa)
链 D 68–148(81 aa)
未记录 8SP O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine × 2 SO4 SULFATE ION × 2 GOL GLYCEROL × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;293 K;ammonium sulphate
分辨率 2.49 Å R-free 0.253
6UXN Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylserine 提交 2019-11-07 Assembly 3 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 E 68–148(81 aa)
链 F 68–148(81 aa)
未记录 8SP O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine × 3 SO4 SULFATE ION × 4 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;293 K;ammonium sulphate
分辨率 2.49 Å R-free 0.253
6UXN Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylserine 提交 2019-11-07 Assembly 4 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 G 68–148(81 aa)
链 H 68–148(81 aa)
未记录 8SP O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine × 3 SO4 SULFATE ION × 4 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;293 K;ammonium sulphate
分辨率 2.49 Å R-free 0.253
6UXN Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylserine 提交 2019-11-07 Assembly 5 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 I 68–148(81 aa)
链 J 68–148(81 aa)
未记录 8SP O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine × 3 SO4 SULFATE ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;293 K;ammonium sulphate
分辨率 2.49 Å R-free 0.253
6UXN Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylserine 提交 2019-11-07 Assembly 6 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 K 68–148(81 aa)
链 L 68–148(81 aa)
未记录 8SP O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine × 3 SO4 SULFATE ION × 5 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;293 K;ammonium sulphate
分辨率 2.49 Å R-free 0.253
6UXO Crystal structure of BAK core domain BH3-groove-dimer in complex with DDM 提交 2019-11-07 Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 B 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 LMT DODECYL-BETA-D-MALTOSIDE × 3 SO4 SULFATE ION × 6 ACT ACETATE ION × 1 EDO 1,2-ETHANEDIOL × 6 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;ammonium sulfate, n-Dodecyl-b-D-maltoside, sodium acetate
分辨率 1.80 Å R-free 0.250
6UXO Crystal structure of BAK core domain BH3-groove-dimer in complex with DDM 提交 2019-11-07 Assembly 2 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 C 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 D 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 LMT DODECYL-BETA-D-MALTOSIDE × 4 SO4 SULFATE ION × 7 ACT ACETATE ION × 1 EDO 1,2-ETHANEDIOL × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;ammonium sulfate, n-Dodecyl-b-D-maltoside, sodium acetate
分辨率 1.80 Å R-free 0.250
6UXO Crystal structure of BAK core domain BH3-groove-dimer in complex with DDM 提交 2019-11-07 Assembly 3 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 E 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 F 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 LMT DODECYL-BETA-D-MALTOSIDE × 5 SO4 SULFATE ION × 5 ACT ACETATE ION × 1 EDO 1,2-ETHANEDIOL × 7 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;ammonium sulfate, n-Dodecyl-b-D-maltoside, sodium acetate
分辨率 1.80 Å R-free 0.250
6UXO Crystal structure of BAK core domain BH3-groove-dimer in complex with DDM 提交 2019-11-07 Assembly 4 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 G 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 H 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 LMT DODECYL-BETA-D-MALTOSIDE × 4 SO4 SULFATE ION × 7 ACT ACETATE ION × 1 EDO 1,2-ETHANEDIOL × 3 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;ammonium sulfate, n-Dodecyl-b-D-maltoside, sodium acetate
分辨率 1.80 Å R-free 0.250
6UXO Crystal structure of BAK core domain BH3-groove-dimer in complex with DDM 提交 2019-11-07 Assembly 5 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 I 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 J 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 LMT DODECYL-BETA-D-MALTOSIDE × 5 SO4 SULFATE ION × 6 ACT ACETATE ION × 1 EDO 1,2-ETHANEDIOL × 4 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;ammonium sulfate, n-Dodecyl-b-D-maltoside, sodium acetate
分辨率 1.80 Å R-free 0.250
6UXO Crystal structure of BAK core domain BH3-groove-dimer in complex with DDM 提交 2019-11-07 Assembly 6 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 K 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 L 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 LMT DODECYL-BETA-D-MALTOSIDE × 3 SO4 SULFATE ION × 4 ACT ACETATE ION × 1 EDO 1,2-ETHANEDIOL × 4 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 4.6;293 K;ammonium sulfate, n-Dodecyl-b-D-maltoside, sodium acetate
分辨率 1.80 Å R-free 0.250
6UXP Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylglycerol 提交 2019-11-07 Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 B 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 PG8 1,2-DIOCTANOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL) × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;magnesium chloride, PEG 4000, tris-chloride
分辨率 2.49 Å R-free 0.247
6UXP Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylglycerol 提交 2019-11-07 Assembly 2 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 C 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 D 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 PG8 1,2-DIOCTANOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL) × 3 GOL GLYCEROL × 4 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;magnesium chloride, PEG 4000, tris-chloride
分辨率 2.49 Å R-free 0.247
6UXP Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylglycerol 提交 2019-11-07 Assembly 3 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 E 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 F 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 PG8 1,2-DIOCTANOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL) × 2 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;magnesium chloride, PEG 4000, tris-chloride
分辨率 2.49 Å R-free 0.247
6UXP Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylglycerol 提交 2019-11-07 Assembly 4 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 G 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 H 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 PG8 1,2-DIOCTANOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL) × 2 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;magnesium chloride, PEG 4000, tris-chloride
分辨率 2.49 Å R-free 0.247
6UXQ Crystal structure of BAK core domain BH3-groove-dimer in complex with POPC and C8E4 提交 2019-11-07 Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 B 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 SO4 SULFATE ION × 3 C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE × 6 EDO 1,2-ETHANEDIOL × 3 LBN 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 5.5;293 K;ammonium sulphate, trisodium citrate, tetraethylene glycol monooctyl ether, 1-palmitoyl-2-oleoyl-glycero-3-phosphocholine
分辨率 1.70 Å R-free 0.214
6UXQ Crystal structure of BAK core domain BH3-groove-dimer in complex with POPC and C8E4 提交 2019-11-07 Assembly 2 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 C 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 D 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 SO4 SULFATE ION × 1 C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE × 2 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 5.5;293 K;ammonium sulphate, trisodium citrate, tetraethylene glycol monooctyl ether, 1-palmitoyl-2-oleoyl-glycero-3-phosphocholine
分辨率 1.70 Å R-free 0.214
6UXR Crystal structure of BAK core domain BH3-groove-dimer in complex with LysoPC 提交 2019-11-07 Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
链 B 68–148(81 aa) 片段:Core/dimerisation domain, residues 68-148
未记录 K6G [(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] hexadecanoate × 2 PG4 TETRAETHYLENE GLYCOL × 1 PGE TRIETHYLENE GLYCOL × 4 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;calcium chloride, PEG 3350, sodium acetate, sodium HEPES
分辨率 1.80 Å R-free 0.232
7K02 The crystal structure of a BAK dimer activated by detergent 提交 2020-09-02 Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 67–186(120 aa)
链 B 67–186(120 aa)
突变:C166S 突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;pH 7;291 K;50% (v/v) methane pentane diol (MPD) and 0.1 M imidazole pH 7.0
分辨率 3.40 Å R-free 0.343
7K02 The crystal structure of a BAK dimer activated by detergent 提交 2020-09-02 Assembly 2 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 C 67–186(120 aa)
链 D 67–186(120 aa)
突变:C166S 突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;pH 7;291 K;50% (v/v) methane pentane diol (MPD) and 0.1 M imidazole pH 7.0
分辨率 3.40 Å R-free 0.343
7K02 The crystal structure of a BAK dimer activated by detergent 提交 2020-09-02 Assembly 3 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 E 67–186(120 aa)
链 F 67–186(120 aa)
突变:C166S 突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;pH 7;291 K;50% (v/v) methane pentane diol (MPD) and 0.1 M imidazole pH 7.0
分辨率 3.40 Å R-free 0.343
7LK4 Crystal structure of BAK L100A in complex with activating antibody fragments 提交 2021-02-01 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 6 PDB 声明:hexameric(6) 与蛋白数一致
链 P 23–186(164 aa)
链 R 23–186(164 aa)
突变:L100A, C166S 突变:L100A, C166S MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 3 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;281 K;38.9 % 2-methyl-2,4-pentanediol, 0.1 M Sodium cacodylate pH 6.44, 4 % Polyethylene glycol 8000
分辨率 3.10 Å R-free 0.262
7LK4 Crystal structure of BAK L100A in complex with activating antibody fragments 提交 2021-02-01 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 6 PDB 声明:hexameric(6) 与蛋白数一致
链 Q 23–186(164 aa)
链 S 23–186(164 aa)
突变:L100A, C166S 突变:L100A, C166S MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 4 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;281 K;38.9 % 2-methyl-2,4-pentanediol, 0.1 M Sodium cacodylate pH 6.44, 4 % Polyethylene glycol 8000
分辨率 3.10 Å R-free 0.262
7M5A Crystal Structure of human BAK in complex with W3W5_BID 提交 2021-03-23 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 21–186(166 aa)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 EVAPORATION;293 K;0.2 M Potassium Sodium tartrate, 20% PEG 3350
分辨率 1.50 Å R-free 0.219
7M5B Crystal Structure of human BAK in complex with M3W5_BID 提交 2021-03-23 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 21–186(166 aa)
未记录 CU COPPER (II) ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 EVAPORATION;pH 6.5;293 K;15% PEG 4000 0.2 M NaCl 0.1 MES 6.5
分辨率 1.85 Å R-free 0.205
7M5B Crystal Structure of human BAK in complex with M3W5_BID 提交 2021-03-23 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 C 21–186(166 aa)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 EVAPORATION;pH 6.5;293 K;15% PEG 4000 0.2 M NaCl 0.1 MES 6.5
分辨率 1.85 Å R-free 0.205
7M5C Crystal Structure of human BAK in complex with WT BAK BH3 peptide 提交 2021-03-23 Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 21–186(166 aa)
链 B 68–89(22 aa)
未记录 CU COPPER (II) ION × 1 SO4 SULFATE ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 EVAPORATION;pH 6.5;293 K;0.1 M MES (pH 6.5), 0.5 M Ammonium Sulfate
分辨率 3.06 Å R-free 0.249
7M5C Crystal Structure of human BAK in complex with WT BAK BH3 peptide 提交 2021-03-23 Assembly 10 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 S 21–186(166 aa)
链 T 68–89(22 aa)
未记录 CU COPPER (II) ION × 1 SO4 SULFATE ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 EVAPORATION;pH 6.5;293 K;0.1 M MES (pH 6.5), 0.5 M Ammonium Sulfate
分辨率 3.06 Å R-free 0.249
7M5C Crystal Structure of human BAK in complex with WT BAK BH3 peptide 提交 2021-03-23 Assembly 2 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 C 21–186(166 aa)
链 D 68–89(22 aa)
未记录 CU COPPER (II) ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 EVAPORATION;pH 6.5;293 K;0.1 M MES (pH 6.5), 0.5 M Ammonium Sulfate
分辨率 3.06 Å R-free 0.249
7M5C Crystal Structure of human BAK in complex with WT BAK BH3 peptide 提交 2021-03-23 Assembly 3 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 E 21–186(166 aa)
链 F 68–89(22 aa)
未记录 CU COPPER (II) ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 EVAPORATION;pH 6.5;293 K;0.1 M MES (pH 6.5), 0.5 M Ammonium Sulfate
分辨率 3.06 Å R-free 0.249
7M5C Crystal Structure of human BAK in complex with WT BAK BH3 peptide 提交 2021-03-23 Assembly 4 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 G 21–186(166 aa)
链 H 68–89(22 aa)
未记录 CU COPPER (II) ION × 1 SO4 SULFATE ION × 3 X-RAY DIFFRACTION
X-ray结晶条件 EVAPORATION;pH 6.5;293 K;0.1 M MES (pH 6.5), 0.5 M Ammonium Sulfate
分辨率 3.06 Å R-free 0.249
7M5C Crystal Structure of human BAK in complex with WT BAK BH3 peptide 提交 2021-03-23 Assembly 5 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 I 21–186(166 aa)
链 J 68–89(22 aa)
未记录 CU COPPER (II) ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 EVAPORATION;pH 6.5;293 K;0.1 M MES (pH 6.5), 0.5 M Ammonium Sulfate
分辨率 3.06 Å R-free 0.249
7M5C Crystal Structure of human BAK in complex with WT BAK BH3 peptide 提交 2021-03-23 Assembly 6 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 K 21–186(166 aa)
链 L 68–89(22 aa)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 EVAPORATION;pH 6.5;293 K;0.1 M MES (pH 6.5), 0.5 M Ammonium Sulfate
分辨率 3.06 Å R-free 0.249
7M5C Crystal Structure of human BAK in complex with WT BAK BH3 peptide 提交 2021-03-23 Assembly 7 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 M 21–186(166 aa)
链 N 68–89(22 aa)
未记录 CU COPPER (II) ION × 1 SO4 SULFATE ION × 2 X-RAY DIFFRACTION
X-ray结晶条件 EVAPORATION;pH 6.5;293 K;0.1 M MES (pH 6.5), 0.5 M Ammonium Sulfate
分辨率 3.06 Å R-free 0.249
7M5C Crystal Structure of human BAK in complex with WT BAK BH3 peptide 提交 2021-03-23 Assembly 8 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 O 21–186(166 aa)
链 P 68–89(22 aa)
未记录 CU COPPER (II) ION × 1 SO4 SULFATE ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 EVAPORATION;pH 6.5;293 K;0.1 M MES (pH 6.5), 0.5 M Ammonium Sulfate
分辨率 3.06 Å R-free 0.249
7M5C Crystal Structure of human BAK in complex with WT BAK BH3 peptide 提交 2021-03-23 Assembly 9 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 Q 21–186(166 aa)
链 R 68–89(22 aa)
未记录 CU COPPER (II) ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 EVAPORATION;pH 6.5;293 K;0.1 M MES (pH 6.5), 0.5 M Ammonium Sulfate
分辨率 3.06 Å R-free 0.249
7OFM NMR structure of the Bak transmembrane helix in DPC micelles 提交 2021-05-05 Assembly 1 蛋白单体 单体;蛋白 × 1 PDB 声明:monomeric(1) 与蛋白数一致
链 A 183–211(29 aa)
未记录 未记录非水小分子 SOLUTION NMR
NMR测量条件 pH 7;310 K;离子强度(mmCIF原始值)100;压力 1
NMR样品组成 400 uM [U-13C; U-15N; U-2H] Bak-TMH, 20 mM sodium phosphate, 50 mM sodium chloride, 0.5 mM EDTA, 5 mM DTT, 300 mM DPC, 95% H2O/5% D2O | 95% H2O/5% D2O
分辨率未提供
7OFO NMR structure of the Bak transmembrane helix in lipid nanodiscs 提交 2021-05-05 Assembly 1 蛋白单体 单体;蛋白 × 1 PDB 声明:monomeric(1) 与蛋白数一致
链 A 183–211(29 aa)
未记录 未记录非水小分子 SOLUTION NMR
NMR测量条件 pH 7;315 K;离子强度(mmCIF原始值)100;压力 1
NMR样品组成 400 uM [U-13C; U-15N; U-2H] Bak transmembrane helix, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM EDTA, 95% H2O/5% D2O | 95% H2O/5% D2O
分辨率未提供
8CZF Human BAK in complex with the dF2 peptide 提交 2022-05-24 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 23–186(164 aa)
突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;298 K;1.2 M sodium malonate
分辨率 1.30 Å R-free 0.180
8CZG Human BAK in complex with the dF3 peptide 提交 2022-05-24 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 23–186(164 aa)
突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;277 K;PEG 3350 (20% w/v), 0.2 M calcium acetate
分辨率 1.99 Å R-free 0.267
8CZG Human BAK in complex with the dF3 peptide 提交 2022-05-24 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 23–186(164 aa)
突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;277 K;PEG 3350 (20% w/v), 0.2 M calcium acetate
分辨率 1.99 Å R-free 0.267
8CZG Human BAK in complex with the dF3 peptide 提交 2022-05-24 Assembly 3 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 C 23–186(164 aa)
突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;277 K;PEG 3350 (20% w/v), 0.2 M calcium acetate
分辨率 1.99 Å R-free 0.267
8CZG Human BAK in complex with the dF3 peptide 提交 2022-05-24 Assembly 4 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 D 23–186(164 aa)
突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;277 K;PEG 3350 (20% w/v), 0.2 M calcium acetate
分辨率 1.99 Å R-free 0.267
8CZH Human BAK in complex with the dM2 peptide 提交 2022-05-24 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 23–186(164 aa)
突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7.5;298 K;3.5 M sodium formate
分辨率 1.30 Å R-free 0.201
8GSV Crystal structure of human BAK in complex with the Pxt1 BH3 domain 提交 2022-09-07 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 24 PDB 声明:24-meric(24) 与蛋白数一致
链 A 23–185(163 aa)
链 C 23–185(163 aa)
链 E 23–185(163 aa)
链 G 23–185(163 aa)
链 I 23–185(163 aa)
链 K 23–185(163 aa)
链 M 23–185(163 aa)
链 O 23–185(163 aa)
链 Q 23–185(163 aa)
链 S 23–185(163 aa)
链 U 23–185(163 aa)
链 W 23–185(163 aa)
突变:C166S 突变:C166S 突变:C166S 突变:C166S 突变:C166S 突变:C166S 突变:C166S 突变:C166S 突变:C166S 突变:C166S 突变:C166S 突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;291 K;0.1 M Sodium citrate(pH 4.8) and 17 % PEG 3000
分辨率 2.20 Å R-free 0.266
8IGC Crystal structure of Bak bound to Bnip5 BH3 提交 2023-02-20 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 23–183(161 aa)
突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;291 K;0.7 M sodium citrate tribasic dehydrate and 0.1 M Tris-HCl (pH 8.5)
分辨率 1.70 Å R-free 0.226
8IVB K113-Ubiquitinated BAK 提交 2023-03-26 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 18–186(169 aa)
突变:K113C 未记录非水小分子 SOLUTION NMR
NMR测量条件 pH 6.8;310 K;离子强度(mmCIF原始值)100;压力 1
NMR样品组成 20 mM sodium phosphate, 0.1 M sodium chloride, 95% H2O/5% D2O | 95% H2O/5% D2O
分辨率未提供
8SRX Crystal structure of BAK-BAX heterodimer with lysoPC 提交 2023-05-07 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 A 68–146(79 aa)
链 C 68–146(79 aa)
未记录 K6G [(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] hexadecanoate × 3 ZN ZINC ION × 1 NA SODIUM ION × 2 PEG DI(HYDROXYETHYL)ETHER × 2 EDO 1,2-ETHANEDIOL × 2 CL CHLORIDE ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;281 K;0.1 M Bis-tris chloride pH 5.5, 25% PEG 3350, 200 mM sodium acetate
分辨率 2.09 Å R-free 0.265
8SRY Crystal structure of BAK-BAX heterodimer with C12E8 提交 2023-05-08 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 A 68–146(79 aa)
链 C 68–146(79 aa)
未记录 PG0 2-(2-METHOXYETHOXY)ETHANOL × 1 PEG DI(HYDROXYETHYL)ETHER × 2 N8E 3,6,9,12,15-PENTAOXATRICOSAN-1-OL × 1 P33 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL × 1 PG4 TETRAETHYLENE GLYCOL × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;281 K;30% PEG MME 2000, 0.1 M potassium thiocyanate, 0.01% C12E8
分辨率 2.40 Å R-free 0.248
8UKY Crystal structure of BAK in complex with inhibiting antibody 14G6 提交 2023-10-15 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 3 PDB 声明:trimeric(3) 与蛋白数一致
链 C 23–186(164 aa)
未记录 SO4 SULFATE ION × 1 CCN ACETONITRILE × 3 PEG DI(HYDROXYETHYL)ETHER × 3 144 TRIS-HYDROXYMETHYL-METHYL-AMMONIUM × 1 PGE TRIETHYLENE GLYCOL × 2 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;293 K;0.09 M Bis-Tris chloride, pH 5.5, 22.5% PEG3350, 4% acetonitrile
分辨率 2.40 Å R-free 0.252
8UKY Crystal structure of BAK in complex with inhibiting antibody 14G6 提交 2023-10-15 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 3 PDB 声明:trimeric(3) 与蛋白数一致
链 D 23–186(164 aa)
未记录 SO4 SULFATE ION × 2 PEG DI(HYDROXYETHYL)ETHER × 5 144 TRIS-HYDROXYMETHYL-METHYL-AMMONIUM × 1 PGE TRIETHYLENE GLYCOL × 1 EDO 1,2-ETHANEDIOL × 2 1PE PENTAETHYLENE GLYCOL × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;293 K;0.09 M Bis-Tris chloride, pH 5.5, 22.5% PEG3350, 4% acetonitrile
分辨率 2.40 Å R-free 0.252
8Y1Y Crystal structure of the Mcl-1 in complex with a long BH3 peptide of BAK 提交 2024-01-25 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 72–92(21 aa)
未记录 ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;291 K;0.01M Nickel (II) Chloride, 0.1M Tris-HCl pH 8.5, 20% polyethylene glycol monomethyl ether 2000
分辨率 2.01 Å R-free 0.252
8Y1Z Crystal structure of the Mcl-1 in complex with a Short BH3 peptide of BAK 提交 2024-01-25 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 72–87(16 aa)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;291 K;0.2M Lithium Acetate, 18-25% polyethylene glycol 3350
分辨率 1.91 Å R-free 0.235
9CLB Crystal structure of Bak bound to the inhibitory aBAK 提交 2024-07-10 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 A 86–186(101 aa)
突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;pH 6.5;293 K;0.1 M 2-(N-Morpholino)ethanesulfonic acid (MES) pH 6.5, 0.2 M L-Proline and 10% (w/v) polyethylene glycol (PEG) 3350
分辨率 2.86 Å R-free 0.270
9CLB Crystal structure of Bak bound to the inhibitory aBAK 提交 2024-07-10 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 C 86–186(101 aa)
突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;pH 6.5;293 K;0.1 M 2-(N-Morpholino)ethanesulfonic acid (MES) pH 6.5, 0.2 M L-Proline and 10% (w/v) polyethylene glycol (PEG) 3350
分辨率 2.86 Å R-free 0.270
9CLB Crystal structure of Bak bound to the inhibitory aBAK 提交 2024-07-10 Assembly 3 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 E 86–186(101 aa)
突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;pH 6.5;293 K;0.1 M 2-(N-Morpholino)ethanesulfonic acid (MES) pH 6.5, 0.2 M L-Proline and 10% (w/v) polyethylene glycol (PEG) 3350
分辨率 2.86 Å R-free 0.270
9CLB Crystal structure of Bak bound to the inhibitory aBAK 提交 2024-07-10 Assembly 4 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 G 86–186(101 aa)
突变:C166S 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;pH 6.5;293 K;0.1 M 2-(N-Morpholino)ethanesulfonic acid (MES) pH 6.5, 0.2 M L-Proline and 10% (w/v) polyethylene glycol (PEG) 3350
分辨率 2.86 Å R-free 0.270
9CPE Structural basis of BAK sequestration by MCL-1 and consequences for apoptosis initiation 提交 2024-07-18 Assembly 1 蛋白单体 单体;蛋白 × 1 PDB 声明:monomeric(1) 与蛋白数一致
链 A 20–186(167 aa)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;295 K;15-25% PEG 3350, 0.1 M sodium acetate, 0.1M HEPES pH 7.5
分辨率 1.49 Å R-free 0.212
9CPF Structural basis of BAK sequestration by MCL-1 and consequences for apoptosis initiation 提交 2024-07-18 Assembly 1 其他组合 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 E 68–89(22 aa)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;295 K;15-25% PEG 4000, 0.2 M lithium sulfate, 0.1 M TRIS pH 8.5
分辨率 1.70 Å R-free 0.224
9CPF Structural basis of BAK sequestration by MCL-1 and consequences for apoptosis initiation 提交 2024-07-18 Assembly 2 其他组合 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 F 68–89(22 aa)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;295 K;15-25% PEG 4000, 0.2 M lithium sulfate, 0.1 M TRIS pH 8.5
分辨率 1.70 Å R-free 0.224
9CPF Structural basis of BAK sequestration by MCL-1 and consequences for apoptosis initiation 提交 2024-07-18 Assembly 3 其他组合 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 G 68–89(22 aa)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;295 K;15-25% PEG 4000, 0.2 M lithium sulfate, 0.1 M TRIS pH 8.5
分辨率 1.70 Å R-free 0.224
9CPF Structural basis of BAK sequestration by MCL-1 and consequences for apoptosis initiation 提交 2024-07-18 Assembly 4 其他组合 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 H 68–89(22 aa)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;295 K;15-25% PEG 4000, 0.2 M lithium sulfate, 0.1 M TRIS pH 8.5
分辨率 1.70 Å R-free 0.224
9CPH Structural basis of BAK sequestration by MCL-1 and consequences for apoptosis initiation 提交 2024-07-18 Assembly 1 其他组合 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 B 69–89(21 aa)
未记录 未记录非水小分子 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 3.34 Å
9CPN Structural basis of BAK sequestration by MCL-1 and consequences for apoptosis initiation 提交 2024-07-18 Assembly 1 其他组合 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 E 68–89(22 aa)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;295 K;15-25% PEG 4000, 0.2 M lithium sulfate, 0.1 M TRIS pH 8.5
分辨率 1.89 Å R-free 0.243
9CPN Structural basis of BAK sequestration by MCL-1 and consequences for apoptosis initiation 提交 2024-07-18 Assembly 2 其他组合 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 F 68–89(22 aa)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;295 K;15-25% PEG 4000, 0.2 M lithium sulfate, 0.1 M TRIS pH 8.5
分辨率 1.89 Å R-free 0.243
9CPN Structural basis of BAK sequestration by MCL-1 and consequences for apoptosis initiation 提交 2024-07-18 Assembly 3 其他组合 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 G 68–89(22 aa)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;295 K;15-25% PEG 4000, 0.2 M lithium sulfate, 0.1 M TRIS pH 8.5
分辨率 1.89 Å R-free 0.243
9CPN Structural basis of BAK sequestration by MCL-1 and consequences for apoptosis initiation 提交 2024-07-18 Assembly 4 其他组合 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 H 68–89(22 aa)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;295 K;15-25% PEG 4000, 0.2 M lithium sulfate, 0.1 M TRIS pH 8.5
分辨率 1.89 Å R-free 0.243