Current Protein Identity:Q7X9K4 New Search
Main Difference Dimensions in This Set
Different construct Different assembly state Different ligand/ion Different experimental conditions Different structure-quality metrics

Difference tags compare only the current result set; every original PDB and assembly record remains separate.

Related-Structure Differences

Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.

PDB Entry Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Experimental Method Experimental Conditions Structure Quality
4V7E Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome Deposited 2013-11-22 Assembly 1 Protein–RNA Heteromer;Protein × 82 PDB declaration: 88-meric(88) Consistent with all polymers
Chain Bc 22–86(65 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol;pH 7.5;20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol
cryo-EM vitrification conditions Blot for 10 seconds before plunging, use 2 layers of filter paper;Cryogen ETHANE;Blot for 10 seconds (using 2 layers of filter paper) before plunging into liquid ethane (FEI VITROBOT).
Resolution 5.50 Å
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Assembly 1 Protein–RNA Heteromer;Protein × 74 PDB declaration: 81-meric(81) Consistent with all polymers
Chain ua 1–86(86 aa)
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IP9 Wheat 40S ribosome in complex with a tRNAi Deposited 2023-03-14 Assembly 1 Protein–RNA Heteromer;Protein × 32 PDB declaration: 35-meric(35) Consistent with all polymers
Chain ua 1–86(86 aa)
Not recorded MG MAGNESIUM ION × 84 ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.00 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Assembly 1 Protein–RNA Heteromer;Protein × 74 PDB declaration: 80-meric(80) Consistent with all polymers
Chain ua 1–86(86 aa)
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Assembly 1 Protein–RNA Heteromer;Protein × 73 PDB declaration: 79-meric(79) Consistent with all polymers
Chain ua 1–86(86 aa)
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å